Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A10_e649_02.seq
         (1508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)                   33   0.60 
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.0  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 30   4.2  

>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
          Length = 379

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -1

Query: 1442 PPXXXGPPXRGXXPXXGPXGALXXPGPXGGTXXGKGGPXP 1323
            PP   G P     P   P G +   GP GG   GKG P P
Sbjct: 147  PPQGFGYPGPYGMPHAFPNGFMAGRGPYGGGRKGKGPPPP 186


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 1445 PPPXXXGPPXRGXXPXXGPXGALXXPGPXGGTXXGKGGP 1329
            PP    GP  RG  P  GP   +  PGP G     +G P
Sbjct: 387  PPKEDWGPGPRGMGPGMGPPRPMGPPGPHGPPFGPRGPP 425


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 516  NLLSTYLAFTPAFYCFPIVLFLWVLDTLISIYNLHSFYSFHTLMSKC 656
            NL   +++ +  FYC P  + LW+  +   ++    F S  TL   C
Sbjct: 928  NLTGCFVSMSIMFYCHPYPMSLWIGSSAFGLFMSSVFPSTLTLAEHC 974


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,869,861
Number of Sequences: 59808
Number of extensions: 753958
Number of successful extensions: 3171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3162
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)