Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_A10_e649_02.seq
(1508 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 33 2.1
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 33 2.1
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 33 2.1
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 33 2.1
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 33 2.1
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i... 32 6.3
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 32 6.3
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 31 8.3
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 31 8.3
BC008760-1|AAH08760.3| 591|Homo sapiens COL5A1 protein protein. 31 8.3
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 31 8.3
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 31 8.3
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 31 8.3
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 31 8.3
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing factor
protein.
Length = 707
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 1324 GXGPPFPXXVPPXGPGXXRAPX--GPXXGXXPRXGGPXXXGG 1443
G PP P VP GPG + P GP G P GGP GG
Sbjct: 182 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGG 221
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 1324 GXGPPFPXXVPPXGPGXXRAPX--GPXXGXXPRXGGPXXXGG 1443
G PP P VP GPG + P GP G P GGP GG
Sbjct: 182 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGG 221
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 1324 GXGPPFPXXVPPXGPGXXRAPX--GPXXGXXPRXGGPXXXGG 1443
G PP P VP GPG + P GP G P GGP GG
Sbjct: 182 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGG 221
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 1324 GXGPPFPXXVPPXGPGXXRAPX--GPXXGXXPRXGGPXXXGG 1443
G PP P VP GPG + P GP G P GGP GG
Sbjct: 109 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGG 148
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 33.5 bits (73), Expect = 2.1
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 1324 GXGPPFPXXVPPXGPGXXRAPX--GPXXGXXPRXGGPXXXGG 1443
G PP P VP GPG + P GP G P GGP GG
Sbjct: 182 GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKPGGG 221
>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
receptor-interacting protein splice variant b protein.
Length = 1548
Score = 31.9 bits (69), Expect = 6.3
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = -1
Query: 1445 PPPXXXGPPXRGXXPXXGPXGALXXPGPXGGTXX-GKGGPXPSXXXGXFXG 1296
PPP P P P P GG G GGP P+ F G
Sbjct: 309 PPPTTYPPEPPYSTPTVPSSSGRLTPSPRGGPFNPGSGGPLPASSPATFDG 359
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 31.9 bits (69), Expect = 6.3
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = -1
Query: 1445 PPPXXXGPPXRGXXPXXGPXGALXXPGPXGGTXX-GKGGPXPSXXXGXFXG 1296
PPP P P P P GG G GGP P+ F G
Sbjct: 922 PPPTTYPPEPPYSTPTVPSSSGRLTPSPRGGPFNPGSGGPLPASSPATFDG 972
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1296 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Frame = -1
Query: 1442 PPXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1295 PSGRSGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
>BC008760-1|AAH08760.3| 591|Homo sapiens COL5A1 protein protein.
Length = 591
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 49 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 93
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1296 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1296 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1296 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 31.5 bits (68), Expect = 8.3
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = -1
Query: 1439 PXXXGPPX----RGXXPXXGPXGALXXPGPXG--GTXXGKGGPXP 1323
P GPP RG GP GA PGP G G KG P P
Sbjct: 1250 PGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1294
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,855,539
Number of Sequences: 237096
Number of extensions: 4584232
Number of successful extensions: 15986
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15824
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22416935806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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