Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A10_e649_02.seq
         (1508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical pr...    34   0.23 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    32   0.92 
U40423-2|AAA81451.1|  160|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    30   4.9  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    29   8.6  

>Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical protein
            D2023.7 protein.
          Length = 336

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -1

Query: 1442 PPXXXGPPX-RGXXPXXGPXGALXXPGPXG-GTXXGKGGP 1329
            PP   GPP   G     GP GA   PGP G     G GGP
Sbjct: 228  PPGDSGPPGPEGDAGNDGPVGAAGAPGPDGINGFQGPGGP 267


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 1445 PPPXXXGPPXRGXXPXXGPXGALXXPGPXGGTXXGKGGP 1329
            PPP    P      P  GP GA   P    G   G GGP
Sbjct: 368  PPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGP 406



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 1330 GPPFPXXVPPXGPGXXRAPXGPXXGXXPRXGGPXXXG 1440
            GPP     PP   G  + P GP     P  GGP   G
Sbjct: 385  GPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPG 421


>U40423-2|AAA81451.1|  160|Caenorhabditis elegans Hypothetical
           protein C24H10.3 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 528 TYLAFTPAFYCFPIVLFLWVLDTLISIYNLHSFYSFHTLMSKCSAYS 668
           TYL  +P FY FP +   + L  +   ++ HSF+   ++ ++CS  S
Sbjct: 21  TYLLLSP-FYQFPALSTAFPLFNIFLFFHSHSFHVLTSVCARCSPLS 66


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical protein
            T21B4.2 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = -1

Query: 1445 PPPXXXGPPXRGXXPXXGPXGALXXPGPXG--GTXXGKGGP 1329
            PP    GP   G  P  G  G    PGP G  G     GGP
Sbjct: 182  PPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGP 222


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
            protein Y51H4A.9 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 1427 GPPXRGXXPXX-GPXGALXXPGPXGGTXXGKGGPXPSXXXG 1308
            GPP     P   GP GA   PG  GG+    G P P+   G
Sbjct: 211  GPPGPSGAPGQKGPSGAPGAPGQSGGSAL-PGPPGPAGSPG 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,095,587
Number of Sequences: 27780
Number of extensions: 634578
Number of successful extensions: 1887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)