Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A09_e641_01.seq
         (1565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0054 - 773395-774518,776957-777124,777455-778376                 30   5.7  
10_01_0057 + 797732-797793,797819-797914,798816-799012,799730-80...    29   7.6  

>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 153 QNLTYLHSPLSHVIKNQQHKASILVRTDKLI 245
           + L Y+HS +SH I++   K + ++ TDK I
Sbjct: 528 EGLRYMHSSISHTIRHGDIKPANILLTDKFI 558


>10_01_0057 +
           797732-797793,797819-797914,798816-799012,799730-800892
          Length = 505

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 153 QNLTYLHSPLSHVIKNQQHKASILVRTDKLI 245
           + L Y+HS +SH I++   K + ++ TDK +
Sbjct: 283 EGLRYMHSSISHTIRHGDVKPANILLTDKFV 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,401,783
Number of Sequences: 37544
Number of extensions: 400803
Number of successful extensions: 765
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5058519088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)