Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A09_e641_01.seq
         (1565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22023| Best HMM Match : RVT_1 (HMM E-Value=0.00027)                 32   1.4  
SB_37910| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  

>SB_22023| Best HMM Match : RVT_1 (HMM E-Value=0.00027)
          Length = 364

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 83  LVSLKGHR--VAKNIMRVMGRSLT*AEFDLPPLPPFPCH 193
           L+S +GH   ++KNI + +        F  PPLP F CH
Sbjct: 142 LISARGHPEIISKNIEKEVNLGRMAGPFSAPPLPNFQCH 180


>SB_37910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 107 LCDPLTIQAGLVPNXLQPGGXH*XLERPPPRGSXS 3
           +C  +T+  G VP+     G    LERPPPR S +
Sbjct: 1   MCVVITLSLGFVPSNSCSPGDPLVLERPPPRWSSN 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,841,511
Number of Sequences: 59808
Number of extensions: 492200
Number of successful extensions: 2372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2372
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5117670772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)