Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A09_e641_01.seq
         (1565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   7.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   7.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 870 PNDYNHLQLINFINSTSCCPWLRTRFIY 787
           P ++N  + I F   T+C  WL    IY
Sbjct: 699 PENFNESKFIGFTMYTTCIIWLAFVPIY 726


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 870 PNDYNHLQLINFINSTSCCPWLRTRFIY 787
           P ++N  + I F   T+C  WL    IY
Sbjct: 789 PENFNESKFIGFTMYTTCIIWLAFVPIY 816


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 167 PPLPPFPCHKKSTT*SV 217
           PPLPP P H +    SV
Sbjct: 439 PPLPPLPLHTECEDLSV 455


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 167 PPLPPFPCHKKSTT*SV 217
           PPLPP P H +    SV
Sbjct: 439 PPLPPLPLHTECEDLSV 455


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 604 NSSSHSGDYPEQTDRQAEDL 545
           N S +S  YP Q   Q EDL
Sbjct: 19  NRSFYSASYPPQNRSQEEDL 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,573
Number of Sequences: 438
Number of extensions: 5304
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55027500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)