Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A08_e633_02.seq
         (1515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    29   8.6  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    29   8.6  

>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
            homolog protein.
          Length = 1846

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 437  VGYLTLNYTALEKKKC-DDHWYVRL*LCWSYKRKYKAPSII*IHLI 571
            + Y+ +    ++K +C +++WY  + +CW Y  + +   +  +HL+
Sbjct: 1475 LNYIGMARKVIKKPECCENYWYKVMKMCWRYSPRDRPTFLQLVHLL 1520


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
            formation protein 2 protein.
          Length = 1843

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 437  VGYLTLNYTALEKKKC-DDHWYVRL*LCWSYKRKYKAPSII*IHLI 571
            + Y+ +    ++K +C +++WY  + +CW Y  + +   +  +HL+
Sbjct: 1472 LNYIGMARKVIKKPECCENYWYKVMKMCWRYSPRDRPTFLQLVHLL 1517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,081,111
Number of Sequences: 27780
Number of extensions: 498917
Number of successful extensions: 973
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)