Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A08_e633_02.seq
         (1515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27530.1 68416.m03441 vesicle tethering family protein contai...    29   6.1  
At3g09085.1 68416.m01068 expressed protein                             29   8.0  

>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 817 VRTKCGSKMLIIHI*KKSMRGEKEIILKILLQSGDTS*GTPE 692
           + T C +  ++ H+ K ++R  KE  LKI+L+S   S GTPE
Sbjct: 452 LETCCRAASILSHVVKDNLRC-KEKALKIVLESPMPSMGTPE 492


>At3g09085.1 68416.m01068 expressed protein
          Length = 112

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 137 PFVLARHSLLTAPRQPLRGLCVSAVSILFCIFILWYRSAVVKLL 268
           PF + +HS  +  R    G+  S V+++  I I W+  A+V LL
Sbjct: 11  PFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLL 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,096,850
Number of Sequences: 28952
Number of extensions: 443576
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)