Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A07_e625_01.seq
         (1581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   7.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   9.4  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   9.4  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 480  TPAQVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFAL 659
            T A  ++  DAT +     V  L+ LG  +   +   LK L  +++ D S VNY ++  L
Sbjct: 1320 TEAMTVEGVDATRTYSNSFVEILQILGIEAT--RSALLKELRNVIEFDGSYVNYRHLALL 1377

Query: 660  CEHM 671
            C+ M
Sbjct: 1378 CDVM 1381


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 619 FFNNCMRFFKASSLS 575
           F NNC++F+KA SL+
Sbjct: 632 FLNNCLKFYKAFSLT 646


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 276 EDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKY 389
           +D L    IS LYY  KG+ LL A IP IC     +++
Sbjct: 188 KDFLTIVVISRLYYN-KGIDLLIAVIPRICAQHPKVRF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,379,228
Number of Sequences: 5004
Number of extensions: 72590
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 891978300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)