Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A07_e625_01.seq
         (1581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)         44   3e-04

>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
          Length = 512

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
 Frame = +3

Query: 213 AISNANILAGTIELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKYD 392
           A   A++L+   E  RL+   +++   +D+ + +YA+KGLK  KAP+P      K ++ +
Sbjct: 19  AAKPASVLS-VAEQARLRQTFQEAAPFRDLETAHYALKGLKFFKAPMPPNQNVCKFVEDN 77

Query: 393 VKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLD--KKDATLSEIYYSVYALKALGKG 566
           V     I  + +A+++   +   +  +      + D  ++ A  S I+Y+V +L  L  G
Sbjct: 78  VDR-SSILSVYHASSIIKVLGNCQLNLKDAEQMLADSIQEGAPTSTIFYAVSSLSNL--G 134

Query: 567 SVFDKEDALKNLIQLLKKDDSPVNYGYVFAL 659
              D    LK +      D+  V+   +FA+
Sbjct: 135 LKIDSAAVLKAVRAASSSDEDSVS-SAIFAM 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,895,553
Number of Sequences: 59808
Number of extensions: 595130
Number of successful extensions: 1265
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5176359657
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)