Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_A07_e625_01.seq
(1581 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi... 35 0.71
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 34 1.6
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 34 1.6
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 34 1.6
BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein. 34 1.6
BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein. 34 1.6
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 34 1.6
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein. 34 1.6
AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related matrix-... 34 1.6
AK094198-1|BAC04307.1| 408|Homo sapiens protein ( Homo sapiens ... 31 8.8
>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
protein protein.
Length = 3926
Score = 35.1 bits (77), Expect = 0.71
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 1048 GPX*TXGGGPXPGPGXPXXXXGVPXXVAQADGPXPCXNXXXSXSGXPXPXP 1200
GP G GP PGPG P G P G P S + P P P
Sbjct: 14 GPLPPGGAGPGPGPG-PGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGP 63
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNHSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNHSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
Length = 1679
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 270
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 271 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 325
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 326 MPPQTQSPGQPAQP 339
>AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a4 var protein.
Length = 1164
Score = 33.9 bits (74), Expect = 1.6
Identities = 34/134 (25%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Frame = +1
Query: 988 PXRXXXTPXXXXPXX*XXXPGPX*TXGGGPXPGPGXPXXX----XGVPXXVAQADGPXPC 1155
P P P PGP G GP PGP P G P P
Sbjct: 168 PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPP 227
Query: 1156 XNXXXSXSGXPXPXPRGKXXNXXXXXXXGR-----HPXGRGAQPXXPAXYPXXXXTXRPX 1320
G P P P G N + P GR P PA P P
Sbjct: 228 GMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGR-PSPAPPAVPPAAS----PV 282
Query: 1321 FPXXTRXPRRXXPP 1362
P T+ P + P
Sbjct: 283 MPPQTQSPGQPAQP 296
>AK094198-1|BAC04307.1| 408|Homo sapiens protein ( Homo sapiens cDNA
FLJ36879 fis, clone BGGI11000193. ).
Length = 408
Score = 31.5 bits (68), Expect = 8.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 1045 PGPX*TXGGGPXPGPG-XPXXXXGVPXXVAQADGPXPC 1155
PGP G GP PGPG P G GP PC
Sbjct: 363 PGPCPGPGPGPSPGPGPGPSPGPGPGPSPGPGPGPSPC 400
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,035,525
Number of Sequences: 237096
Number of extensions: 3378666
Number of successful extensions: 9794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9649
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23575120416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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