Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A05_e609_01.seq
         (1526 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8VSX0 Cluster: AgrC; n=2; Staphylococcus simulans|Rep:...    36   2.8  
UniRef50_Q9RUC8 Cluster: Putative uncharacterized protein; n=1; ...    34   8.6  

>UniRef50_Q8VSX0 Cluster: AgrC; n=2; Staphylococcus simulans|Rep:
           AgrC - Staphylococcus simulans
          Length = 224

 Score = 35.9 bits (79), Expect = 2.8
 Identities = 25/89 (28%), Positives = 45/89 (50%)
 Frame = +2

Query: 383 FRVIISNTLHL*IITKIYQAKRRQNDIICKYVS*RIKTINSCYITDRYRIKIFDVFIGFC 562
           F +I+ +T++L   TK+Y        ++  Y+   +  I+S  I D+ +  I  V+  + 
Sbjct: 57  FIIILIDTIYLYRKTKLYSILTMVGSVLIIYLG-NLSAISSFLILDQEKTNIIIVYAVYL 115

Query: 563 SGHLFTFTSNQHAYFMEFILTKTIRSIIT 649
              LFT TS   AY + FI+ K  +S ++
Sbjct: 116 --FLFTVTSLILAYLVRFIIQKLKKSYLS 142


>UniRef50_Q9RUC8 Cluster: Putative uncharacterized protein; n=1;
            Deinococcus radiodurans|Rep: Putative uncharacterized
            protein - Deinococcus radiodurans
          Length = 1940

 Score = 34.3 bits (75), Expect = 8.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 1064 SXPKRGPKRLRAWGPFQARNFLKPXPTPPRFLLXXRWXP 1180
            S P R P+R RAW P     F+   P+P R+    RW P
Sbjct: 1901 SPPSRAPRRARAWSP---GRFVSVSPSPTRWPGAPRWSP 1936


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,611,017
Number of Sequences: 1657284
Number of extensions: 19952256
Number of successful extensions: 34653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34550
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 162924907900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)