Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A05_e609_01.seq
         (1526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8 |Schizosac...    30   0.97 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    29   2.2  

>SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 754 FSIFAINLPV---HESS*LCYLRCHKNSTKNIFLFL 656
           F IF   +P+   H  S   YLRCHK   K + + L
Sbjct: 45  FGIFGSAIPIDFLHRQSKFLYLRCHKEDKKKVLVAL 80


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 765 FLPGSQEPVHKKXQPSANTXTXWDT--QFLPTFSTXXVSCPLPAYPIIIHLP 914
           FL G+++ VH K +PS+      DT  Q +P  S       +P Y I   LP
Sbjct: 591 FLDGNRDGVHPKSRPSSKVNLV-DTYPQTIPNVSKPSTPIDVPEYDISACLP 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,725,143
Number of Sequences: 5004
Number of extensions: 84329
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)