Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A05_e609_01.seq
         (1526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    29   6.6  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    29   6.6  

>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 419 IITKIYQAKRRQNDIICKYVS*RIKTINSCYITDRYR-IKIFDVFIGFCSGHLFTFTSNQ 595
           I   ++++    N   C  V   + T+   Y+T   + I +F +  G+CSG L  + +  
Sbjct: 30  IYLALFKSDTIDNFRYCILVFQLLCTLTDFYLTFLMQPIPLFPIIAGYCSGFLAVYLNAS 89

Query: 596 HAYFMEFIL 622
             Y M F++
Sbjct: 90  THYLMAFMM 98


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 419 IITKIYQAKRRQNDIICKYVS*RIKTINSCYITDRYR-IKIFDVFIGFCSGHLFTFTSNQ 595
           I   ++++    N   C  V   + T+   Y+T   + I +F +  G+CSG L  + +  
Sbjct: 30  IYLALFKSDTIDNFRYCILVFQLLCTLTDFYLTFLMQPIPLFPIIAGYCSGFLAVYLNAS 89

Query: 596 HAYFMEFIL 622
             Y M F++
Sbjct: 90  THYLMAFMM 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,523,139
Number of Sequences: 27780
Number of extensions: 540017
Number of successful extensions: 1065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)