Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A05_e609_01.seq
         (1526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin; g...    31   2.7  
At5g50150.1 68418.m06211 expressed protein strong similarity to ...    29   8.1  

>At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin;
            glycine-rich protein 16 (GRP16) PMID:11431566
          Length = 190

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 1337 GXXAPPPGXPXRGGXNPGXXXGGSPLXPXGLAVFRXLPXSXPXRGW 1200
            G     PG    GG  PG   GG P    G AV R    S   R W
Sbjct: 128  GPSGDKPGGASGGGDKPGGASGGGPGGASGGAVGRRTWRSVGRRTW 173


>At5g50150.1 68418.m06211 expressed protein strong similarity to
           unknown protein (gb|AAF04872.1) contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 420

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 780 QEPVHKKXQPSANTXTXWDTQFLPTFSTXXVSCPLPAYPI 899
           Q+P+    +PS    T ++  F   +S    SCP+ + PI
Sbjct: 99  QKPLDSPYRPSKGNETTYEESFNQLWSMSGESCPIGSIPI 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,518,440
Number of Sequences: 28952
Number of extensions: 459194
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)