Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A04_e601_02.seq
         (1540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0036 - 9914606-9915561,9916287-9916368                           29   7.4  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   9.8  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    29   9.8  

>10_06_0036 - 9914606-9915561,9916287-9916368
          Length = 345

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +2

Query: 1391 PKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPTXXPXXXXP 1534
            P P P      P  P          PP + P  PP   P   P    P
Sbjct: 161  PPPLPPTSVASPPPPGVPLSFAPNAPPEVVPSVPPAAAPPSTPVVVVP 208


>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
            3308247-3308315,3308427-3308513,3308753-3308858,
            3309118-3309237,3309327-3309406,3309497-3309878,
            3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 1391 PKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPTXXP 1519
            P P     +  P  PP G  + Q  PP   P  PP   P   P
Sbjct: 83   PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPP 125


>01_06_0004 + 25507739-25508206,25509346-25509477,25509910-25510086,
            25510175-25510219,25510305-25510512,25510766-25510825,
            25510826-25511016,25511219-25511614
          Length = 558

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
 Frame = +2

Query: 1331 PXLXXXPXKPKXRGXXXXXXPKPXPSXXKTXPKNPPRGXG-AXQKXP-PXLGPXXPPXXX 1504
            P L   P     +G      P P PS       +P  G G A  K P P  G    P   
Sbjct: 69   PPLSPPPSPGNGKGYQSPYQPSPSPSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPSR 128

Query: 1505 PT 1510
            PT
Sbjct: 129  PT 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,714,577
Number of Sequences: 37544
Number of extensions: 403037
Number of successful extensions: 1851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)