Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A04_e601_02.seq
         (1540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54162-1|CAA38101.1|  572|Homo sapiens 64 Kd autoantigen protein.      34   1.2  
BC080187-1|AAH80187.1|  600|Homo sapiens leiomodin 1 (smooth mus...    34   1.2  
AL513217-2|CAH72278.1|  631|Homo sapiens leiomodin 1 (smooth mus...    34   1.2  

>X54162-1|CAA38101.1|  572|Homo sapiens 64 Kd autoantigen protein.
          Length = 572

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 1358 PKXRGXXXXXXPKPXPSXX-KTXPKNPPRGXGAXQKXPPXLGPXXPP 1495
            PK  G      PKP P    K  PKN P+  GA    PP   P  PP
Sbjct: 471  PKA-GAVAKGSPKPSPQPSPKPSPKNSPKKGGAPAAPPPPPPPLAPP 516


>BC080187-1|AAH80187.1|  600|Homo sapiens leiomodin 1 (smooth muscle)
            protein.
          Length = 600

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 1358 PKXRGXXXXXXPKPXPSXX-KTXPKNPPRGXGAXQKXPPXLGPXXPP 1495
            PK  G      PKP P    K  PKN P+  GA    PP   P  PP
Sbjct: 499  PKA-GAVAKGSPKPSPQPSPKPSPKNSPKKGGAPAAPPPPPPPLAPP 544


>AL513217-2|CAH72278.1|  631|Homo sapiens leiomodin 1 (smooth muscle)
            protein.
          Length = 631

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 1358 PKXRGXXXXXXPKPXPSXX-KTXPKNPPRGXGAXQKXPPXLGPXXPP 1495
            PK  G      PKP P    K  PKN P+  GA    PP   P  PP
Sbjct: 499  PKA-GAVAKGSPKPSPQPSPKPSPKNSPKKGGAPAAPPPPPPPLAPP 544


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,775,071
Number of Sequences: 237096
Number of extensions: 2224357
Number of successful extensions: 5941
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5365
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22965027146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)