Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A04_e601_02.seq
         (1540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56330.1 68418.m07031 carbonic anhydrase family protein conta...    32   1.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    31   2.0  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   6.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   8.2  
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p...    29   8.2  

>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
            proline-rich extensin domains, INTERPRO:IPR002965;
            contains Pfam profile PF00194: Eukaryotic-type carbonic
            anhydrase
          Length = 350

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 22/68 (32%), Positives = 24/68 (35%)
 Frame = +2

Query: 1331 PXLXXXPXKPKXRGXXXXXXPKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPT 1510
            P     P KPK +       PKP P+   T PK  P       K  P   P  PP   PT
Sbjct: 44   PTPAPTPPKPKPK--PAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAP-TPPNPKPT 100

Query: 1511 XXPXXXXP 1534
              P    P
Sbjct: 101  PAPTPPKP 108



 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/63 (28%), Positives = 19/63 (30%)
 Frame = +2

Query: 1331 PXLXXXPXKPKXRGXXXXXXPKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPT 1510
            P     P KPK         PKP P+     PK  P       K  P   P   P   P 
Sbjct: 66   PAPAPTPPKPKPAPAPTPPKPKPKPAPTPPNPKPTPAPTPPKPKPAPAPAPTPAPKPKPA 125

Query: 1511 XXP 1519
              P
Sbjct: 126  PKP 128



 Score = 29.5 bits (63), Expect = 6.2
 Identities = 20/62 (32%), Positives = 22/62 (35%)
 Frame = +2

Query: 1349 PXKPKXRGXXXXXXPKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPTXXPXXX 1528
            P KPK         PKP P+   T PK  P+      K  P   P  PP   P   P   
Sbjct: 28   PPKPKPAPAPTPPKPKPTPA--PTPPKPKPKPAPTPPKPKPAPAP-TPPKPKPAPAPTPP 84

Query: 1529 XP 1534
             P
Sbjct: 85   KP 86


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical to
            gi_11935088_gb_AAG41964
          Length = 209

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 1391 PKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXP 1507
            P P PS  K   K   +   A    P  LGP  PP   P
Sbjct: 127  PAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESP 165


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
            non-consensus splice site at the intron:exon boundary
            (AT:exon)
          Length = 247

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +2

Query: 1397 PXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPTXXPXXXXP 1534
            P P+   T P  P          PP   P  PP   PT  P    P
Sbjct: 73   PPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSP 118


>At3g24550.1 68416.m03083 protein kinase family protein contains Pfam
            domain PF00069: Protein kinase domain
          Length = 652

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
 Frame = +2

Query: 1331 PXLXXXPXKPKXRGXXXXXXPKPXPSXXK--TXPKNPPRGXGAXQKXPPXLGPXXPPXXX 1504
            P     P  P          P P  S     T P +PP         PP   P  PP   
Sbjct: 7    PGTTPSPSPPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSP-LPPSLP 65

Query: 1505 PTXXPXXXXP 1534
            P   P    P
Sbjct: 66   PPSPPGSLTP 75


>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
            protein similar to fasciclin-like arabinogalactan-protein
            1 [Arabidopsis thaliana] gi|13377776|gb|AAK20857
          Length = 280

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +2

Query: 1391 PKPXPSXXKTXPKNPPRGXGAXQKXPPXLGPXXPPXXXPT 1510
            P P P      P   P   G     PP L P   P   P+
Sbjct: 190  PAPSPKKGAATPAPAPADEGDYADAPPGLAPETAPASAPS 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,700,048
Number of Sequences: 28952
Number of extensions: 260245
Number of successful extensions: 1145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)