Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_A02_e585_02.seq
(1463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 31 0.53
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 30 0.70
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 29 1.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 2.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 3.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 4.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 6.5
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 8.6
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 514 SVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSASAGA 398
S GFGS G G+F S+ T ++ F +SG VS++A A
Sbjct: 137 STGFGSQGTGGGLFGSSTTPATTNAFGTSG-FVSSNANA 174
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 30.3 bits (65), Expect = 0.70
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +3
Query: 471 EKTPEPKSAEPKPTDVPAXXXXXXXXXXXXXXXXVPSKSKDTPAKVNEVPTEVSEKSASP 650
+K P PK+ + P PS SKDT V + K+ +P
Sbjct: 127 KKKPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRK------SKAGAP 180
Query: 651 DKPIDVGSATKPDAPV-THDGPSEHVTSK 734
P V + + + P T D PS +++K
Sbjct: 181 SDPSSVHAPSSLEKPAGTGDLPSSEISTK 209
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 594 TPAKVNEVPTEVSEKSASPDKPIDVGSATKPDAPVTHDGPSEHVTSKPRKKVD 752
+P ++NE P P KPID GS +P P + +S P K+D
Sbjct: 92 SPLRLNEAPRRRGRPRKYPPKPIDEGS--EPIIKRKRGRPPKIKSSSPSTKLD 142
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 422 FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 258
F SF + FF + +FS + + FLF F + F F S LS LF
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 2.8
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +3
Query: 435 TKPKPDDKVKADEKTPEPKSAEPKPTD-VPAXXXXXXXXXXXXXXXXVPSKSKDTPA-KV 608
TK ++ A+++ +P EP T A S +P K
Sbjct: 29 TKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITSEADTEKYNSSKSPVNKE 88
Query: 609 NEVPTEVSEKSASPDKPIDVGSATKPDAPVTHDGPSEHVTSKPRKKVDSS 758
V + SEKS++ +KP + +KP A + +E +S+ +K SS
Sbjct: 89 GSVEKKSSEKSSTNNKPWRGDNTSKPSA----NSSAERTSSQHQKPETSS 134
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 430 KRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLNQKRSPRIV 558
K N + K+ +RH ++ PT + NLN R+P+IV
Sbjct: 470 KESLSNDQLSVKEKRRH------HKKAPTLIQNLNSPRTPKIV 506
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 435 TKPKPDDKVKADEKTPEPKSAEPKPTD 515
+K DD++K D+KT E K A P D
Sbjct: 835 SKGSNDDEMKIDKKTTEEKEATPMEMD 861
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -2
Query: 517 TSVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSAS 407
+S GF S+ +G SS+ +L+S G VSS LVS+S
Sbjct: 3517 SSGGFSSSAFSTG--SSSFSLTSENGSVSSSSLVSSS 3551
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 153 ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 317
IT TS+D N + +FC+ F A+P + + +V P +T +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,165,294
Number of Sequences: 5004
Number of extensions: 67992
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 814673514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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