Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A01_e577_01.seq
         (1495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    30   3.7  
AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    30   4.9  

>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
 Frame = +1

Query: 346 IYLIKEHSVICKKEXVIXRISYIRGLLIITYXIN*XXWKKKTRHIYMCVYKKRKIKTSVD 525
           +Y + + ++  K   V      I  LLII + +           + MC YK  +I  ++ 
Sbjct: 410 LYSVGDLAIAFKHHVVAFLAMVITMLLIIAFVVQ--------MDLVMCWYKMPEIVGALY 461

Query: 526 RIYKQNSXXKINILYQNINIMKNYHLVNFEL*I----SILKIITFYNVNSLYIHLN 681
            +    +   ++  Y + N ++N  +V ++  +    SIL ++TFYN++S +  LN
Sbjct: 462 VLPMLIAGAIVHSHYADNNRIRNVEMVQYDTILLSFASILFLMTFYNLSSAFYVLN 517


>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 VNCGESQSYT-QLLYLIIIKCTTTYYLP 268
           + CGE   Y+ Q   +I+++C TT++LP
Sbjct: 182 IYCGEDPRYSSQTRIIIVLECLTTFFLP 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,895,777
Number of Sequences: 27780
Number of extensions: 389788
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)