Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H10_e560_16.seq
         (1519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    30   0.96 
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    28   2.9  

>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 136 LEDGPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSI 273
           ++DG    T+G  ++ + F S++ GG   +Y T  +  ESF  T++
Sbjct: 60  IDDGAWSSTLG-PILSQAFASVHPGGTLRVYSTADEADESFEMTAL 104


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 622 LFQKWQRMVAPPESQRPASKRRNV 693
           LFQ+W R   PPE  +P   +R +
Sbjct: 60  LFQRWYRSFLPPEDGKPQKLKRTL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,067,280
Number of Sequences: 5004
Number of extensions: 71023
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)