Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H10_e560_16.seq
         (1519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                   245   8e-65
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   33   0.60 
SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)                 30   4.2  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  

>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score =  245 bits (599), Expect = 8e-65
 Identities = 121/218 (55%), Positives = 149/218 (68%)
 Frame = +1

Query: 163  IGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCT 342
            IGRTLIPRYFRSI+EGGV+ELYY + QPKES+HNT+ITLDC++ TM+T H KP++TKVCT
Sbjct: 391  IGRTLIPRYFRSIFEGGVTELYYHLLQPKESYHNTTITLDCENTTMITSHIKPVYTKVCT 450

Query: 343  EGRLILEFTFDDLMRIKSWHMAVRAHRELIPRQAVHPPDHASLDQLTKNITR*GITNSTL 522
            EGRLILEFTFDD+MRI++WH  +  HRE+IPR  V   D   L+Q++KN+TR G+TN TL
Sbjct: 451  EGRLILEFTFDDMMRIRNWHFTIMQHREMIPRNVVAMQDPGMLEQVSKNVTRQGMTNFTL 510

Query: 523  NYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPESQRPASKRRNVKXX 702
            NYLRLCVILEPMQELMSRHK Y ++PR+  +    +K +    P  S   +S   + K  
Sbjct: 511  NYLRLCVILEPMQELMSRHKTYNMNPRETPRPRTRRKRKSSSTPNASTPTSSGNSHSKKK 570

Query: 703  XXXXXXXXXXXXXXXQDPTSVSPPXDVMVVGEPSLDGG 816
                                     DVMVVGEPSL GG
Sbjct: 571  SPTASNFSLAT-------------QDVMVVGEPSLMGG 595


>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 468 RCVVRRMHRLPRYEFPMRPDRHVPRLDPHQVVKRKL*YQPAFRAHLSKNRFPVMRDHR 295
           RC+V++ HR+P+   P+  D  +P+  P   V R     P  +      R PV +DHR
Sbjct: 34  RCLVKQDHRIPK-RCPVTQDDRIPKRCPVTQVDRIPKRCPVTQDDRIPKRCPVTQDHR 90


>SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)
          Length = 257

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 310 HGKPIFTKVCTEGRLILEFTFDDLMRIK 393
           H K  F+  C +GR++   T DDL  +K
Sbjct: 10  HYKDAFSDACVDGRMLNHLTLDDLQHLK 37


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +1

Query: 766 SPPXDVMVVGEPSLDGGXISAMKTSD*SPGXEPHTXATGVXWSAPLPPXG 915
           S P    +  +PS   G IS+ KT D      P T  +G  WS+P PP G
Sbjct: 564 SSPDGAELPPKPSGSSGEISS-KTPDVEASRSPPT--SGDFWSSPPPPLG 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,460,512
Number of Sequences: 59808
Number of extensions: 631929
Number of successful extensions: 1307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)