Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H10_e560_16.seq
         (1519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical pr...   100   2e-21
Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical pr...   100   2e-21
Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical pr...   100   2e-21
U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.    100   2e-21
U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.    100   2e-21

>Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical
           protein F58A3.1c protein.
          Length = 629

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
 Frame = +1

Query: 97  FFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE--SF 258
           FF+DD  L      E       +RY I R  IP++FRSI++ G+ EL Y +R P    + 
Sbjct: 134 FFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTL 193

Query: 259 HNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRAHREL 429
            N S   + ++   +T + +    +V TEG+L +EF  FD++M  RIK+W + ++   E 
Sbjct: 194 ANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEF 253

Query: 430 IPRQAVHPPDHASLDQLTKNITR*GITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRD 606
           +  Q        + +   +N  R G   ST N + +  IL+PMQ +MS  K A A++PR+
Sbjct: 254 VYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPRE 313

Query: 607 CLKTTLFQKWQ 639
            +K TLFQ  Q
Sbjct: 314 VMKRTLFQHHQ 324


>Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical
           protein F58A3.1b protein.
          Length = 578

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
 Frame = +1

Query: 97  FFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE--SF 258
           FF+DD  L      E       +RY I R  IP++FRSI++ G+ EL Y +R P    + 
Sbjct: 83  FFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTL 142

Query: 259 HNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRAHREL 429
            N S   + ++   +T + +    +V TEG+L +EF  FD++M  RIK+W + ++   E 
Sbjct: 143 ANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEF 202

Query: 430 IPRQAVHPPDHASLDQLTKNITR*GITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRD 606
           +  Q        + +   +N  R G   ST N + +  IL+PMQ +MS  K A A++PR+
Sbjct: 203 VYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPRE 262

Query: 607 CLKTTLFQKWQ 639
            +K TLFQ  Q
Sbjct: 263 VMKRTLFQHHQ 273


>Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical
           protein F58A3.1a protein.
          Length = 592

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
 Frame = +1

Query: 97  FFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE--SF 258
           FF+DD  L      E       +RY I R  IP++FRSI++ G+ EL Y +R P    + 
Sbjct: 97  FFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTL 156

Query: 259 HNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRAHREL 429
            N S   + ++   +T + +    +V TEG+L +EF  FD++M  RIK+W + ++   E 
Sbjct: 157 ANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEF 216

Query: 430 IPRQAVHPPDHASLDQLTKNITR*GITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRD 606
           +  Q        + +   +N  R G   ST N + +  IL+PMQ +MS  K A A++PR+
Sbjct: 217 VYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPRE 276

Query: 607 CLKTTLFQKWQ 639
            +K TLFQ  Q
Sbjct: 277 VMKRTLFQHHQ 287


>U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.
          Length = 579

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
 Frame = +1

Query: 97  FFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE--SF 258
           FF+DD  L      E       +RY I R  IP++FRSI++ G+ EL Y +R P    + 
Sbjct: 84  FFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTL 143

Query: 259 HNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRAHREL 429
            N S   + ++   +T + +    +V TEG+L +EF  FD++M  RIK+W + ++   E 
Sbjct: 144 ANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEF 203

Query: 430 IPRQAVHPPDHASLDQLTKNITR*GITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRD 606
           +  Q        + +   +N  R G   ST N + +  IL+PMQ +MS  K A A++PR+
Sbjct: 204 VYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPRE 263

Query: 607 CLKTTLFQKWQ 639
            +K TLFQ  Q
Sbjct: 264 VMKRTLFQHHQ 274


>U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.
          Length = 592

 Score =  100 bits (240), Expect = 2e-21
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 10/191 (5%)
 Frame = +1

Query: 97  FFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE--SF 258
           FF+DD  L      E       +RY I R  IP++FRSI++ G+ EL Y +R P    + 
Sbjct: 97  FFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTL 156

Query: 259 HNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRAHREL 429
            N S   + ++   +T + +    +V TEG+L +EF  FD++M  RIK+W + ++   E 
Sbjct: 157 ANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEF 216

Query: 430 IPRQAVHPPDHASLDQLTKNITR*GITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRD 606
           +  Q        + +   +N  R G   ST N + +  IL+PMQ +MS  K A A++PR+
Sbjct: 217 VYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPRE 276

Query: 607 CLKTTLFQKWQ 639
            +K TLFQ  Q
Sbjct: 277 VMKRTLFQHHQ 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,879,495
Number of Sequences: 27780
Number of extensions: 455900
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)