Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H10_e560_16.seq
         (1519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden...    44   3e-04
At5g62090.2 68418.m07793 expressed protein                             36   0.070
At5g62090.1 68418.m07792 expressed protein                             36   0.070
At4g25520.1 68417.m03680 transcriptional co-regulator family pro...    35   0.16 
At4g25515.1 68417.m03679 transcriptional co-regulator family pro...    34   0.21 
At3g24550.1 68416.m03083 protein kinase family protein contains ...    30   4.6  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    29   6.1  

>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
           identical to SEUSS transcriptional co-regulator
           [Arabidopsis thaliana] gi|18033922|gb|AAL57277
          Length = 877

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = +1

Query: 175 LIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRL 354
           ++PR F+  YE G  E    +  P+ES  N+S  +  ++    T        +V  +G+L
Sbjct: 384 VLPRLFKIKYESGTLEELLYVDMPRES-QNSSGQIVLEYAK-ATQESVFEHLRVVRDGQL 441

Query: 355 ILEFTFDDLMRIKSWHMAVRAHRELIPRQAVHP 453
            + F+ D  ++I SW    R H ELIPR+ + P
Sbjct: 442 RIVFSPD--LKIFSWEFCARRHEELIPRRLLIP 472


>At5g62090.2 68418.m07793 expressed protein
          Length = 816

 Score = 35.9 bits (79), Expect = 0.070
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 298 MVTHHGKPIFTKVCTEGRLI----LEFTFDDLMRIKSWHMAVRAHRELIPRQAVHP 453
           MV  +GK +   V    R++    L   F   ++I SW    R H EL+PR+ V P
Sbjct: 407 MVLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAP 462


>At5g62090.1 68418.m07792 expressed protein
          Length = 816

 Score = 35.9 bits (79), Expect = 0.070
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 298 MVTHHGKPIFTKVCTEGRLI----LEFTFDDLMRIKSWHMAVRAHRELIPRQAVHP 453
           MV  +GK +   V    R++    L   F   ++I SW    R H EL+PR+ V P
Sbjct: 407 MVLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAP 462


>At4g25520.1 68417.m03680 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 748

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = +1

Query: 208 GGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFTFDDLMR 387
           G + EL Y     +  F N  + L+       T H +    +V  EG L + F+ D  ++
Sbjct: 283 GIIDELLYLDHPRENRFPNGLMMLEYRKAVQETVHEQ---FRVVREGHLRIIFSQD--LK 337

Query: 388 IKSWHMAVRAHRELIPRQAVHP 453
           I SW    R H EL+ R+ + P
Sbjct: 338 ILSWEFCARRHEELLLRRLIAP 359


>At4g25515.1 68417.m03679 transcriptional co-regulator family
           protein contains similarity to GP|18033922|gb|AAL57277
           SEUSS transcriptional co-regulator [Arabidopsis
           thaliana]
          Length = 471

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = +1

Query: 208 GGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFTFDDLMR 387
           G + EL Y     +  F N  + L+       T H +    +V  EG L + F+ D  ++
Sbjct: 41  GIIDELLYLDHPRENRFPNGLMMLEYRKAVQETVHEQ---FRVVREGHLRIIFSPD--LK 95

Query: 388 IKSWHMAVRAHRELIPRQAVHP 453
           I SW    R H EL+ R+ + P
Sbjct: 96  ILSWEFCARRHEELLLRRLIAP 117


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +1

Query: 754 PTSVSPPXDVMVVGEPSLDGGXISAMKTSD*SPGXEPHTXATGVXWSAPLPPX--G*XPX 927
           P+  SPP +      P           T+  SP   P T +T    S+PLPP      P 
Sbjct: 13  PSPPSPPTNSTTTTPPP--AASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPP 70

Query: 928 GTLTPXRLCRPIPERGXXPXNNFP 999
           G+LTP  L +P P     P    P
Sbjct: 71  GSLTP-PLPQPSPSAPITPSPPSP 93


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 1635

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 485 LVSWSNDAWSGGCT 444
           L+ W+N  WSGGCT
Sbjct: 325 LIEWNNGNWSGGCT 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,007,564
Number of Sequences: 28952
Number of extensions: 425287
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)