Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_H09_e552_15.seq
(1753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 166 7e-42
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 140 7e-34
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 91 4e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 6e-19
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 78 3e-15
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 74 5e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 72 3e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 3e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 64 8e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 63 1e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 1e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 8e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 53 1e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 52 2e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 52 2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 50 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 4e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 0.001
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.004
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.86
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 1.5
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 8.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 8.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 166 bits (404), Expect = 7e-42
Identities = 80/109 (73%), Positives = 95/109 (87%), Gaps = 2/109 (1%)
Frame = +2
Query: 224 LDTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGK 403
++TN+D+V +TFDDMNLK ELLRGIYAY FE+PSAI QRAIMP + RDV+AQAQ GTGK
Sbjct: 10 IETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
Query: 404 TATFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALGD--HFEC 544
TATFSIS+LQ+IDTS+++C ALILAPTRELA QIQ VV+ALGD + EC
Sbjct: 70 TATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVEC 118
Score = 50.8 bits (116), Expect = 6e-07
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +3
Query: 534 ILNAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
++N CHAC GGT R+DM L++G G + G ++DMI RRALP A ++F L+E
Sbjct: 113 LMNVECHACIGGTLVRDDMAALQAGVHVVVG-TPGRVHDMIQRRALPTDA-VQMFVLDE 169
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 140 bits (338), Expect = 7e-34
Identities = 67/94 (71%), Positives = 79/94 (84%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
+F++MNLKE+LLRGIYAY +E PSA+ RAI+ +GRDVIAQAQ GTGKTATFSI ILQ
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 434 QIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
ID S+R+ ALIL+PTRELA QIQ VV+ALGDH
Sbjct: 82 SIDLSVRDTQALILSPTRELAVQIQNVVLALGDH 115
Score = 36.3 bits (80), Expect = 0.013
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 537 LNAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRAL 671
+N CHAC GGT+ D++ L+ G G + G + DMI RR L
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSG-TPGRVTDMIRRRNL 159
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 91.1 bits (216), Expect = 4e-19
Identities = 43/99 (43%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQG--RDVIAQAQXGTGKTATFSIS 424
++F+++ LK ELL+GIY+ F+KPS I ++A+ + R++I Q+Q GTGKTA F+++
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 425 ILQQIDTSIRECXALILAPTRELAXQIQXVVIALGDHFE 541
+L ++D S+ + A+ LAP+RELA QI VV +G + E
Sbjct: 174 MLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTE 212
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 90.6 bits (215), Expect = 6e-19
Identities = 45/93 (48%), Positives = 59/93 (63%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK ELL GI+ FE+PS I + +I + GRD++A+A+ GTGKTA F I L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 437 IDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
+DT + LIL PTRELA Q V LG H
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 78.2 bits (184), Expect = 3e-15
Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
+TF D NL L R I+ FEKP+++ I ++G+D++AQA+ G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 431 Q------QIDTSIRECXALILAPTRELAXQIQXVV 517
+ QID + R AL+L PTRELA Q+ V+
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 74.1 bits (174), Expect = 5e-14
Identities = 42/84 (50%), Positives = 49/84 (58%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F D LK ELLR I FE PS + Q I I G DV+ QA+ G GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 437 IDTSIRECXALILAPTRELAXQIQ 508
I+ E L+L TRELA QI+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIK 136
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 71.7 bits (168), Expect = 3e-13
Identities = 37/101 (36%), Positives = 59/101 (58%)
Frame = +2
Query: 227 DTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKT 406
D+ ++ +TF ++ + +EL F+ P+ I Q AI + RDVI AQ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 407 ATFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALG 529
A F++ ++Q++ + A++LAPTRELA QI A+G
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIG 138
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F M L + LLR I+ F+ P+ I ++ I ++GRDV+ A+ G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 437 IDTSI--RECXALILAPTRELAXQIQXVV 517
+ +++ ALIL+P RELA Q VV
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVV 159
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 63.7 bits (148), Expect = 8e-11
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
+F MNL +L+G+ FE P+ I + I + G+D++ A G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 434 QI---DTSIRECXALILAPTRELAXQIQXV 514
++ + LIL PTRELA Q V
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSV 349
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +2
Query: 239 DQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFS 418
+ ++F D+ + L+ + A +P+ I + I ++GR+ I A+ G+GKTA F+
Sbjct: 3 EHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFA 62
Query: 419 ISILQQIDTSIRECXALILAPTRELAXQIQXVVIALG 529
+ I+++ ALIL PTRELA QI ALG
Sbjct: 63 LPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALG 99
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 59.7 bits (138), Expect = 1e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATF---SI 421
E F D+ L E + + I FE + I +R+I P + GRDV+ A+ G+GKT F +I
Sbjct: 89 EKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
Query: 422 SILQQIDTSIRE-CXALILAPTRELAXQI 505
+L + R +I++PTRELA QI
Sbjct: 149 EMLYALKFKPRNGTGVIIISPTRELALQI 177
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 8e-08
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
+++ L E+L+ + +++PS+I + AI +Q +D+I A+ G+GKTA F I ++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 437 ID--TSIREC------XALILAPTRELAXQIQ 508
I + E A++LAPTRELA QIQ
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 53.2 bits (122), Expect = 1e-07
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 NLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI--D 442
+L E+L + F KP I I G D+I +A G+GKT F I IL+ +
Sbjct: 128 SLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRN 187
Query: 443 TSIRECXALILAPTRELAXQI 505
+ AL++APTRELA QI
Sbjct: 188 VDAKYVQALVVAPTRELAHQI 208
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
+F +N+ + L + A F+K + + AI ++ +D++ +A G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 434 QI---DTSIRECXALILAPTRELAXQI 505
++ DT ALI+APTRELA QI
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQI 88
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 52.0 bits (119), Expect = 2e-07
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
TF++ +L+ + FE P+ I Q+A + GRD++ + G+GKT ++ + +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 434 QIDTSIREC-----XALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
I+ L+LAPTRELA QIQ G C++
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVY 230
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.6 bits (113), Expect = 1e-06
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
++ L + + I + +EKP++I +AI GRDVI A+ G+GKT F + + +
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 434 QID-----TSIRECXALILAPTRELAXQI 505
I + A+I+ PTRELA QI
Sbjct: 479 HIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = +2
Query: 242 QVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSI 421
+ + F ++ L + + F + I ++ I ++GRD++ A+ G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 422 SILQQID----TSIRECXALILAPTRELAXQIQXVVIALG 529
+++ + TS+ AL+++PTRELA Q ++ +G
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.0 bits (109), Expect = 4e-06
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMP-CIQGRDVIAQAQXGTGKTATFSISILQ 433
FD++++ +L G+ Y ++P+ I Q A P + GRDV+ A+ G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPI-QAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 434 QID---TSIRECXALILAPTRELAXQ 502
++ + L+++PTRELA Q
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQ 251
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 335 QRAIMPCIQG-RDVIAQAQXGTGKTATFSISILQQIDTSI-RECXALILAPTRELAXQI 505
QR +P I RD++A A G+GKT + ILQ++ + A+I+APTREL QI
Sbjct: 73 QRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.9 bits (89), Expect = 0.001
Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Frame = +2
Query: 188 YDGPPGMEPGGALDTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGR 367
YD P GG ++ V E F L LL+ I + +P+ + + +I GR
Sbjct: 153 YDDIPVEVSGGDIEP----VNE-FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Query: 368 DVIAQAQXGTGKTATFSISIL--------------QQIDTSIRECXA----LILAPTREL 493
D++A AQ G+GKTA F IL Q R A LILAPTREL
Sbjct: 208 DLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267
Query: 494 AXQI 505
QI
Sbjct: 268 VCQI 271
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Frame = +2
Query: 320 PSAIXQRAIMPCI---QGRDVIAQAQXGTGKTATFSISILQQI-------DTSIRECXAL 469
P+AI Q +P + +D +AQ G+GKT + + I+Q++ T A+
Sbjct: 162 PTAI-QSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAV 220
Query: 470 ILAPTRELAXQIQXVVIALGDH 535
I+APTREL QI V L ++
Sbjct: 221 IMAPTRELCQQIYNVANKLNNN 242
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +2
Query: 311 FEKPSAIXQRAIMPCIQGRD-VIAQAQXGTGKTATFSISILQQI-----DTSIRECXALI 472
FEK + + QR + + + QA+ GTGKT F + + + + + ++I
Sbjct: 58 FEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVI 117
Query: 473 LAPTRELAXQI 505
L+PTRELA QI
Sbjct: 118 LSPTRELALQI 128
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.86
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 272 LKEELLRGIY-AYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQIDTS 448
L +EL+ +Y + EK AI G VI +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 449 IRECXALILAPTRELA 496
+ A + PT+ LA
Sbjct: 354 DNQSTAFFVFPTKSLA 369
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 224 LDTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRD 370
LDTNW + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 227 DTNWDQVXETFDDMNLKEELLRGIYAYXF 313
D WD E FDD N + +GI+ F
Sbjct: 283 DIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 392 GTGKTATFSISILQQI----DTSIRECXALILAP-TRELAXQIQ 508
G G T F+ SILQQI + SI +C + +P R + +IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,698
Number of Sequences: 5004
Number of extensions: 41573
Number of successful extensions: 114
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 77
effective length of database: 1,977,170
effective search space used: 1000448020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -