Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H09_e552_15.seq
         (1753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   2e-09
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    26   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.8 bits (126), Expect = 2e-09
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
 Frame = +2

Query: 233 NWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTAT 412
           N  Q  E+F+   L+  +L  I    ++KP+ + + A+   + GRD++A AQ G+GKTA 
Sbjct: 190 NVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAA 249

Query: 413 FSISIL-----QQIDTSIR----ECXALILAPTRELAXQIQXVVI 520
           F++ I+     + +D  +     E   +I++PTREL  QI   ++
Sbjct: 250 FAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIV 294


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 284 IPPSNSYHQRFPPLDPSLYPMH 219
           IPP N+Y  R PPL+P   PMH
Sbjct: 388 IPP-NAYRFR-PPLNPRFGPMH 407


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -3

Query: 275 SNSYHQRFPP----LDPSLYPMHRPAPFQGVHHKL 183
           S  +++RF P    +D S  P HR  P    HH L
Sbjct: 42  SPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHL 76


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 248 PLDPSLYPMHRPAPFQG 198
           PL+P LY  HR   F G
Sbjct: 11  PLNPKLYDKHRAPKFLG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,080
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 62
effective length of database: 119,187
effective search space used: 62096427
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)