Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_H09_e552_15.seq
(1753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 136 3e-32
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 136 3e-32
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 136 3e-32
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 128 1e-29
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 109 7e-24
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 91 3e-18
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 91 3e-18
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 84 2e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 84 2e-16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 83 4e-16
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 77 3e-14
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 77 3e-14
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 73 4e-13
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 63 6e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 62 8e-10
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 62 1e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 59 8e-09
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 58 1e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 58 2e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 58 2e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 57 3e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 57 3e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 57 3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 57 4e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 56 5e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 5e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 55 1e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 54 2e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 2e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 54 3e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 54 3e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 53 5e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 7e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 53 7e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 53 7e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 52 9e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 2e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 51 3e-06
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 50 4e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 49 8e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 1e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 2e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 48 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 48 2e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 48 3e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 47 4e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 46 6e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 46 8e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 46 8e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 1e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 46 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 1e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 45 1e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 45 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 4e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 0.002
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.007
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 39 0.009
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 38 0.015
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 36 0.062
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 36 0.11
At3g10020.1 68416.m01202 expressed protein 35 0.19
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 35 0.19
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 34 0.25
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 31 3.1
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 136 bits (330), Expect = 3e-32
Identities = 66/102 (64%), Positives = 80/102 (78%)
Frame = +2
Query: 230 TNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTA 409
T++D V E+FD M L+E LLRGIYAY FEKPSAI QR I+P +G DVI QAQ GTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 410 TFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
TF +LQQ+D S+ +C AL+LAPTRELA QI+ V+ ALGD+
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDY 133
Score = 39.9 bits (89), Expect = 0.005
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 537 LNAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
L HAC GGT+ RED R L++G G + G ++DM+ R++L K+F L+E
Sbjct: 134 LGVKVHACVGGTSVREDQRILQAGVHVVVG-TPGRVFDMLKRQSLRAD-NIKMFVLDE 189
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 136 bits (330), Expect = 3e-32
Identities = 65/102 (63%), Positives = 81/102 (79%)
Frame = +2
Query: 230 TNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTA 409
TN+D+V ++FD M L+ +LLRGIYAY FEKPSAI QR I+P +G DVI QAQ GTGKTA
Sbjct: 34 TNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTA 93
Query: 410 TFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
TF +LQQ+D S+ +C AL+LAPTRELA QI+ V+ ALGD+
Sbjct: 94 TFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDY 135
Score = 39.5 bits (88), Expect = 0.007
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 537 LNAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
L AC GGT+ RED R L+SG G + G ++D++ R++L A K+F L+E
Sbjct: 136 LGVKAQACVGGTSVREDQRVLQSGVHVVVG-TPGRVFDLLRRQSLRADA-IKMFVLDE 191
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 136 bits (330), Expect = 3e-32
Identities = 65/102 (63%), Positives = 81/102 (79%)
Frame = +2
Query: 230 TNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTA 409
T++D+V E+FD M L+E LLRGIYAY FEKPSAI QR I+P +G DVI QAQ GTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 410 TFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
TF +LQQ+D ++ +C AL+LAPTRELA QI+ V+ ALGD+
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY 133
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 552 HACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
HAC GGT+ RED R L++G G + G ++DM+ R++L K+F L+E
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVG-TPGRVFDMLRRQSLRPDC-IKMFVLDE 189
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 128 bits (308), Expect = 1e-29
Identities = 64/119 (53%), Positives = 84/119 (70%), Gaps = 8/119 (6%)
Frame = +2
Query: 203 GMEPGGALD--------TNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCI 358
G GGA+D T+ + +F+DM +KE++LRG+Y Y FEKPSAI QRA+MP +
Sbjct: 11 GRRGGGAMDDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPIL 70
Query: 359 QGRDVIAQAQXGTGKTATFSISILQQIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
QGRDVIAQAQ GTGKT+ ++S+ Q +DTS RE ALIL+PTRELA Q + + A+G H
Sbjct: 71 QGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLH 129
Score = 37.5 bits (83), Expect = 0.027
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = +3
Query: 540 NAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
N HAC GG + ED+R LE G G + G + DMI RR+L A KL L+E
Sbjct: 131 NIQAHACIGGNSVGEDIRKLEHGVHVVSG-TPGRVCDMIKRRSLRTRA-IKLLILDE 185
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 109 bits (261), Expect = 7e-24
Identities = 47/95 (49%), Positives = 72/95 (75%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
++FDDM + +++LRG+Y Y ++KPS I QRA++P ++GRDVIAQAQ GTGKT+ +IS+
Sbjct: 22 KSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVC 81
Query: 431 QQIDTSIRECXALILAPTRELAXQIQXVVIALGDH 535
Q ++ S R+ L+L+P+RELA Q + + A+G H
Sbjct: 82 QIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH 116
Score = 37.5 bits (83), Expect = 0.027
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +3
Query: 540 NAXCHACXGGTNXREDMRXLESGXXCG*GYSRGVLYDMILRRALPCXAPSKLFXLNE 710
N HAC GG + ED++ LE G G + G +YDMI R +L A KL L+E
Sbjct: 118 NIQAHACIGGKSIGEDIKKLERGVHAVSG-TPGRVYDMIKRGSLQTKA-VKLLVLDE 172
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 90.6 bits (215), Expect = 3e-18
Identities = 45/95 (47%), Positives = 60/95 (63%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK ELL GIY FE+PS I + +I + GRD++A+A+ GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 437 IDTSIRECXALILAPTRELAXQIQXVVIALGDHFE 541
ID A+I+ PTRELA Q V LG H +
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 90.6 bits (215), Expect = 3e-18
Identities = 45/95 (47%), Positives = 60/95 (63%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK ELL GIY FE+PS I + +I + GRD++A+A+ GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 437 IDTSIRECXALILAPTRELAXQIQXVVIALGDHFE 541
ID A+I+ PTRELA Q V LG H +
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 84.2 bits (199), Expect = 2e-16
Identities = 41/86 (47%), Positives = 56/86 (65%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK +LL+GIY FEKPS I + +I + G D++A+A+ GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 437 IDTSIRECXALILAPTRELAXQIQXV 514
ID + A+IL PTRELA Q V
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQV 211
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 84.2 bits (199), Expect = 2e-16
Identities = 41/86 (47%), Positives = 56/86 (65%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK +LL+GIY FEKPS I + +I + G D++A+A+ GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 437 IDTSIRECXALILAPTRELAXQIQXV 514
ID + A+IL PTRELA Q V
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQV 211
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 83.4 bits (197), Expect = 4e-16
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+D LK +LLRGIY FEKPS I + +I + G D++A+A+ GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 437 IDTSIRECXALILAPTRELAXQIQXVVIALGDHFE 541
ID A+IL PTRELA Q V L + +
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLK 250
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 77.4 bits (182), Expect = 3e-14
Identities = 43/83 (51%), Positives = 49/83 (59%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F D LK ELLR I FE PS + I I G DVI QA+ G GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 437 IDTSIRECXALILAPTRELAXQI 505
I+ S + AL+L TRELA QI
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 77.4 bits (182), Expect = 3e-14
Identities = 43/83 (51%), Positives = 49/83 (59%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F D LK ELLR I FE PS + I I G DVI QA+ G GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 437 IDTSIRECXALILAPTRELAXQI 505
I+ S + AL+L TRELA QI
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQI 130
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 73.3 bits (172), Expect = 4e-13
Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYA-YXFEKPSAIXQRAIMPCIQG---RDVIAQAQXGTGKTATFSIS 424
F+D+NL EL++G+Y FEKPS I Q +P I + +IAQA G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKI-QAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 425 ILQQIDTSIRECXALILAPTRELAXQIQXVVIALG 529
+L ++D ++RE AL + PTRELA Q V+ +G
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 62.9 bits (146), Expect = 6e-10
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
+TF ++NL LLR ++KP+ I I + GRD+ A A G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 431 QQI---DTSIRECXALILAPTRELAXQIQXVV 517
+++ + LIL PTRELA QI ++
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMI 258
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 62.5 bits (145), Expect = 8e-10
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Frame = +2
Query: 239 DQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFS 418
++V +TF ++ ++EEL++ ++ PS I A+ ++G+DVI AQ G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 419 ISILQQI-----DTSIRE-------CXALILAPTRELAXQIQXVVIALG 529
I ILQ + D+ ++ A +L+PTRELA QI ALG
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 61.7 bits (143), Expect = 1e-09
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Frame = +2
Query: 239 DQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFS 418
++ ++F+++ L L+R + EKP+ I Q AI ++G+DV+A+A+ G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 419 ISILQQI---DTSIRE---CXALILAPTRELAXQIQXVVIAL 526
+ +LQ++ D+ ++ A IL P+REL Q+ V +L
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 59.3 bits (137), Expect = 8e-09
Identities = 31/91 (34%), Positives = 47/91 (51%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F+ + L E + KP+ + + + GRDV+ AQ G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 437 IDTSIRECXALILAPTRELAXQIQXVVIALG 529
+ AL++ PTRELA Q+ ALG
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALG 150
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATF----S 418
+TF+D +++ I +EKP+AI +A+ + GRDVI A+ G+GKTA F
Sbjct: 228 KTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
Query: 419 ISILQQIDTSIRE-CXALILAPTRELAXQI 505
+ I+ Q + E +I APTRELA QI
Sbjct: 288 VHIMDQPELQRDEGPIGVICAPTRELAHQI 317
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 58.0 bits (134), Expect = 2e-08
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSIS--- 424
TF+ L E+LR + + F P+ I + +Q RD++A A+ G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 425 ILQQIDTSIRE-CXALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
+L+ R LILAPTRELA QIQ + G C++
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLY 542
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 57.6 bits (133), Expect = 2e-08
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCI-QGRDVIAQAQXGTGKTATFSISILQ 433
F+ +NL + I ++ P+ I QR MP I G DV+A A+ G+GKTA F I +L+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPI-QRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88
Query: 434 QIDTSIRE--CXALILAPTRELAXQIQXVVIALG 529
++ + + ALIL+PTR+LA Q LG
Sbjct: 89 KLKQHVPQGGVRALILSPTRDLAEQTLKFTKELG 122
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 57.2 bits (132), Expect = 3e-08
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSIS--- 424
+F+ ELLR + + F P+ I ++ +QGRD++A A+ G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 425 ILQQIDTSIR-ECXALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
LQ+I R L+L+PTRELA QIQ + G C++
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLY 265
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 57.2 bits (132), Expect = 3e-08
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSIS--- 424
+F+ ELLR + + F P+ I ++ +QGRD++A A+ G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 425 ILQQIDTSIR-ECXALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
LQ+I R L+L+PTRELA QIQ + G C++
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLY 265
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 57.2 bits (132), Expect = 3e-08
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSIS--- 424
+F+ ELLR + + F P+ I ++ +QGRD++A A+ G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 425 ILQQIDTSIR-ECXALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
LQ+I R L+L+PTRELA QIQ + G C++
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLY 265
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.8 bits (131), Expect = 4e-08
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
++++ L ELL+ + ++KPS I AI +Q RDVI A+ G+GKTA F + +L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 434 QI--------DTSIRECXALILAPTRELAXQIQ 508
I + A+++APTRELA QI+
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 56.4 bits (130), Expect = 5e-08
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Frame = +2
Query: 263 DMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI- 439
++ + E+++ + + EK I + + P ++GRD+I +A+ GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 440 -----DTSIRECXALILAPTRELAXQIQ 508
R L+LAPTRELA Q++
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVE 195
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.4 bits (130), Expect = 5e-08
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = +2
Query: 263 DMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI- 439
D+ + E+++ + EK I + + P ++GRD+I +A+ GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 440 -----DTSIRECXALILAPTRELAXQIQ 508
+ L+LAPTRELA Q++
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVE 207
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 55.2 bits (127), Expect = 1e-07
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Frame = +2
Query: 224 LDTNWDQV---XETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXG 394
++T+ D V TF +++L E L I + KP+ + + AI ++GRD++A AQ G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 395 TGKTATFSISILQQI--DTSIRE--------CXALILAPTRELAXQI 505
+GKTA F I+ I D ++ A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.4 bits (125), Expect = 2e-07
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 11/69 (15%)
Frame = +2
Query: 335 QRAIM-PCIQGRDVIAQAQXGTGKTATFSISILQQIDTSIRECXA----------LILAP 481
QRA++ P +QGRD+IA+A+ GTGKT F I I++++ + A L+LAP
Sbjct: 129 QRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAP 188
Query: 482 TRELAXQIQ 508
TRELA Q++
Sbjct: 189 TRELAKQVE 197
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 54.4 bits (125), Expect = 2e-07
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
TF L +LL + ++ P+ I +AI + G+ ++A A G+GKTA+F + I+
Sbjct: 111 TFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170
Query: 434 QIDT--------SIRECXALILAPTRELAXQIQXVVIALG 529
+ T R A++LAPTREL Q++ LG
Sbjct: 171 RCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 54.0 bits (124), Expect = 3e-07
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F D N + +L I F +P+ I + ++GRD+I A+ G+GKT + + L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 437 IDTSIR-----ECXALILAPTRELAXQIQ 508
+ R LILAPTRELA QIQ
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQ 255
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 54.0 bits (124), Expect = 3e-07
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F D N + +L I F +P+ I + ++GRD+I A+ G+GKT + + L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 437 IDTSIR-----ECXALILAPTRELAXQIQ 508
+ R LILAPTRELA QIQ
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQ 255
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 53.2 bits (122), Expect = 5e-07
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATF---SI 421
+TF+ ++L + + I F + + I +AI P + G DV+ A+ G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 422 SILQQIDTSIRE-CXALILAPTRELAXQ 502
+L ++ + R L++ PTRELA Q
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQ 241
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 7e-07
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 290 RGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSI---SILQQIDTSIR-E 457
R +Y+ F PS I ++ +Q RD++A A+ G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 458 CXALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
L+L+PTRELA QIQ + G + C++
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLY 336
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 52.8 bits (121), Expect = 7e-07
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +2
Query: 368 DVIAQAQXGTGKTATFSISILQQIDTSIRECXALILAPTRELAXQI 505
DVI QA+ G GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.8 bits (121), Expect = 7e-07
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATF---SIS 424
TFD ++L E+ I F+ + I +I P ++G+DV+ A+ G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 425 ILQQIDTSIRE-CXALILAPTRELAXQIQXVVIALGDH 535
+L + S R +++ PTRELA Q + V L H
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKH 187
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 52.4 bits (120), Expect = 9e-07
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Frame = +2
Query: 224 LDTNWDQV---XETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXG 394
++T+ D V TF +++L E L I + KP+ + + AI GRD++A AQ G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 395 TGKTATFSISILQQI--DTSIRE--------CXALILAPTRELAXQI 505
+GKTA F I+ I D I A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQI 240
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +2
Query: 278 EELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQIDTSIRE 457
E +L + F P+ I + A+ GRD I AQ G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 458 CXALILAPTRELAXQIQXV 514
A+I+ PTREL Q+ V
Sbjct: 145 VQAVIVVPTRELGMQVTKV 163
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.8 bits (116), Expect = 3e-06
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
+TF + NL E +L FEKPS I + GRD+I A+ G+GKT F I +
Sbjct: 116 KTFAESNLPENVLD--CCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAI 173
Query: 431 QQIDTSIREC---------XALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
+ ++ L+L+PTRELA QI V+ G+ C++
Sbjct: 174 MHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVY 226
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 50.4 bits (115), Expect = 4e-06
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
++F D+ + +L + F +P+ I + ++GRD+I A+ G+GKT ++ + +
Sbjct: 99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 431 QQIDTSIREC-----XALILAPTRELAXQIQXVVIALGDHFECXXPCMH 562
++ L+LAPTRELA QIQ G + C++
Sbjct: 159 VHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIY 207
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.2 bits (112), Expect = 8e-06
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
+TF ++ E++++ + F++P+ I A P I G+ I Q G+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 431 QQI--------DTSIREC-XALILAPTRELAXQI 505
Q++ S C ++L PT ELA Q+
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.4 bits (110), Expect = 1e-05
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCI-QGRDVIAQAQXGTGKTATFSISILQ 433
FD L L+GI F K + Q A +P I QG+D++A+A+ GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGF-KTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIE 140
Query: 434 QI--------DTSIRECXALILAPTRELAXQ 502
+ D L++ PTRELA Q
Sbjct: 141 AVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.0 bits (109), Expect = 2e-05
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
FD L L+ I FE + + + + +QG+DV+A+A+ GTGKT F + ++
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 437 I--------DTSIRECXALILAPTRELAXQ 502
+ D+ L++ PTRELA Q
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.0 bits (109), Expect = 2e-05
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
TF D++L + L I + +P+ + + AI + RD++A AQ G+GKTA F I+
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 434 QI--DTSIRE--------CXALILAPTRELAXQI 505
I D + A+IL+PTRELA QI
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.0 bits (109), Expect = 2e-05
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Frame = +2
Query: 254 TFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ 433
TF D++L + L I + +P+ + + AI + RD++A AQ G+GKTA F I+
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 434 QI--DTSIRE--------CXALILAPTRELAXQI 505
I D + A+IL+PTRELA QI
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 47.6 bits (108), Expect = 3e-05
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Frame = +2
Query: 203 GMEPGGALDTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQ 382
G+E ++ ++ E F ++ L EE++ + E P+ I I ++ + V+
Sbjct: 96 GVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLG 155
Query: 383 AQXGTGKTATFSISILQQI---------DTSIRECXALILAPTRELAXQIQXVVIALGDH 535
+ G+GKT + + I+Q + T R ++L PTREL+ Q+ V ++ H
Sbjct: 156 SHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHH 215
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.8 bits (106), Expect = 4e-05
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
++F+++ L + LL + F P+ + A+ I+G D + Q+ G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 431 QQI-------------DTSIRECXALILAPTRELAXQI 505
+I + E A+I+AP+REL QI
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 46.4 bits (105), Expect = 6e-05
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSI----S 424
FD+ + L+ + A K + + + C+ G+D + +A+ GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 425 ILQQIDT-----SIRECXALILAPTRELAXQI 505
+L+ +++ + ALIL PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 46.0 bits (104), Expect = 8e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAI-MPCIQGRDVIAQAQXGTGKTATFSISILQ 433
+ M L L++ IY F++P+ I + + QG+DVI A+ G+GKT F + ILQ
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQ 251
Query: 434 QI 439
++
Sbjct: 252 RL 253
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 46.0 bits (104), Expect = 8e-05
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 284 LLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQID-TSIREC 460
+LR + F++P+ I ++AI + GR+ A A G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 461 XALILAPTRELAXQ 502
A+IL+P RELA Q
Sbjct: 212 RAVILSPARELAAQ 225
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 46.0 bits (104), Expect = 8e-05
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +2
Query: 272 LKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI-DTS 448
L ++L + +EKP I +A+ + GRD I A+ G+GKT F + +L+ I D
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 449 IREC----XALILAPTRELAXQI 505
E L++APTREL QI
Sbjct: 463 PVEAGDGPIGLVMAPTRELVQQI 485
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 45.6 bits (103), Expect = 1e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +2
Query: 311 FEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQ-------QIDTSIRECXAL 469
FE P+ + +AI + GRDV+ A GTGKT + ++ ++D S AL
Sbjct: 50 FEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRS-HGTFAL 108
Query: 470 ILAPTRELAXQIQXVVIALGDHFECXXP 553
++ PTREL Q+ + L F P
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVP 136
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 45.6 bits (103), Expect = 1e-04
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +2
Query: 272 LKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI-DTS 448
L ++L + +EKP I +A+ + GRD I A+ G+GKT F + +L+ I D
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 449 IREC----XALILAPTRELAXQI 505
E L++APTREL QI
Sbjct: 596 PVEAGDGPIGLVMAPTRELVQQI 618
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.2 bits (102), Expect = 1e-04
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
FD L L+ I +E + + + + ++G+DV+A+A+ GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 437 I--------DTSIRECXALILAPTRELAXQ 502
+ D AL++ PTRELA Q
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 45.2 bits (102), Expect = 1e-04
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSI----S 424
FD+ + L+ + A K + + + C+ G+D + +A+ GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 425 ILQQIDT-----SIRECXALILAPTRELAXQI 505
+L+ +++ + LIL PTRELA QI
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.8 bits (101), Expect = 2e-04
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +2
Query: 257 FDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQ 436
F + + ++ RG+ + + + AI + GRD++ A+ G+GKT F I IL++
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 437 ID----TSIRECXALILAPTRELAXQIQXVVIALG 529
+ + +I++PTRELA Q V+ +G
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 43.6 bits (98), Expect = 4e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Frame = +2
Query: 338 RAIMPCIQGRDVIAQAQXGTGKTATFSISILQQIDT--------SIRECXALILAPTREL 493
+AI + G+ ++A A G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 494 AXQIQXVVIALG 529
Q++ LG
Sbjct: 62 CVQVEDQAKMLG 73
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 326 AIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQI-DTSIRECXALILAPTRELAXQ 502
A+ I P RD+ + G+GKT ++++ I+Q + +R AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 503 IQXVVIAL 526
++ V A+
Sbjct: 110 VKDVFDAI 117
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 39.5 bits (88), Expect = 0.007
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
+ F DM LLR + P+ I + + + GRD+I A G+GKT F + ++
Sbjct: 97 KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156
Query: 431 -----QQIDTSI---RECXALILAPTRELAXQIQXVV 517
++I I AL++ P+RELA Q VV
Sbjct: 157 ILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.1 bits (87), Expect = 0.009
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +2
Query: 272 LKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQIDTS- 448
L E+++ + FE + + I +DV+ A G+GKT F + ++ I S
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 449 -----IRECXALILAPTRELAXQIQXVVIAL 526
+ +I++PTREL+ QI V A+
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 38.3 bits (85), Expect = 0.015
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +2
Query: 272 LKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISILQQIDTS- 448
L E+++ + FE + + I +DV+ A G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 449 -----IRECXALILAPTRELAXQIQXV 514
+ +I++PTREL+ QI V
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKV 109
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 36.3 bits (80), Expect = 0.062
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Frame = +2
Query: 356 IQGRDVIAQAQXGTGKTATFSISILQQIDTSI----------RECXALILAPTRELAXQI 505
+ G D++ +A+ G GKT F + IL+ + R L+L PTRELA Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 506 QXVVIALGDHFECXXPCMH 562
A G C++
Sbjct: 191 AADFDAYGGSLGLSSCCLY 209
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 35.5 bits (78), Expect = 0.11
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +2
Query: 251 ETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATF----- 415
+ F DM +L + +P+ I + + + GRD+I A G+GKT F
Sbjct: 146 KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
Query: 416 SISILQQIDTSI---RECXALILAPTRELAXQIQXVV 517
I++ +++ I LI+ P+RELA Q VV
Sbjct: 206 MIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 34.7 bits (76), Expect = 0.19
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +2
Query: 149 GRYSKNGPSKDQVYD---GPPGMEPGGALDTNWD--QVXETFDDMNLKEELLRGIYAYXF 313
G+Y+ GP + + Y+ PP M+ G D N+D QV ++ DD+ + EL++G
Sbjct: 77 GKYTWEGPDRMEDYEMQPDPPAMDEG---DPNYDEEQVKKSGDDVAV--ELVKGEVEVAK 131
Query: 314 EKPSAIXQRAIMPCIQGR 367
E P+ + + + P + GR
Sbjct: 132 EAPAGVARVEVDPRLVGR 149
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 34.7 bits (76), Expect = 0.19
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 227 DTNWDQVXETFDDMNLKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKT 406
DT + ++ + L + + + F++PS I + G+DVI A+ G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 407 ATFSISILQQI 439
+ I+ Q+
Sbjct: 132 HGYLAPIIDQL 142
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 34.3 bits (75), Expect = 0.25
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = +2
Query: 257 FDDMN--LKEELLRGIYAYXFEKPSAIXQRAIMPCIQGRDVIAQAQXGTGKTATFSISIL 430
F D+ L +++ + FE + + I +DV A G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 431 QQIDTSI------RECXALILAPTRELAXQIQXV 514
+ + S + +I++PTREL+ QI V
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNV 109
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 30.7 bits (66), Expect = 3.1
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 98 VANMSHSX*KKHR*XLAGRYSKN-----GPSKDQVYDGPPGMEPGGALDTNWDQVXETFD 262
VA SH+ KKHR L + +KN GP K G + T +D ++ +
Sbjct: 695 VAFASHTYGKKHRQNLESQSAKNETMSTGPGKLSKDYGEKTKKVSCKNQTTFDSQLKSQN 754
Query: 263 DMNLKEELLRGIYAYXFEKPSAIXQRAIM 349
+ +EL+ + FE SA+ Q +I+
Sbjct: 755 HYTMAKELVEKAFVSAFEHVSALEQFSIV 783
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,467
Number of Sequences: 28952
Number of extensions: 239799
Number of successful extensions: 717
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4785600720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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