Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H08_e544_16.seq
         (1513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    34   0.059
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    30   0.96 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   5.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   5.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   5.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   6.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   8.9  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = -1

Query: 448  QRTMLAQLLCLGEFSGI-NNICLKANKLLLTVMLKCVDPVI---ISIALA*LT 302
            Q  +LA  L L +F  + NN C++   LL+T++ KC +P+I   + I LA LT
Sbjct: 937  QSLLLAASLTLSKFMCLSNNFCMEHLPLLITILEKCDNPIIRNNLVIGLADLT 989


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +3

Query: 579  GFMTLGPKRRLQKALMKMNILPKNTINDGLHSDDSILSNSESLNKPNTSTSFYNSHSI 752
            G +  G K   QK L    ILPK  ++DGL    S L     L  P+ S  F+N+  I
Sbjct: 1149 GNLVCGSKTISQKKL----ILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDI 1202


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
 Frame = -1

Query: 283 FTSNT*SPLFNPTSSA---------FDCFSTLKINIPYPRS-YPPRIVKLRGSSLVGRES 134
           +T+NT  P+FNP ++A               + +   + R   P R+V  +GS   G   
Sbjct: 12  YTTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFE 71

Query: 133 VTLLVRAFAEHAMFS 89
            T  +  + +H MFS
Sbjct: 72  CTDDITKYTKHTMFS 86


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 864 LCTNKILAGLISSVNF*NMFRNNLKTG--THHNILILNQECYVSYKKMYW 721
           LC NK+L  L+      N F+N L+T   T   +  + +  Y  Y +  W
Sbjct: 674 LCVNKLLGSLLDH----NDFKNRLETAIETFRELPCMEKPTYAQYLEQLW 719


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 611 ESSFRSQSHKTLLWFFFDTMLLWLLCG 531
           ESSF + S KT +W  F  ++L +LCG
Sbjct: 433 ESSFAAASRKTDIW-CFGLLVLQMLCG 458


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = -1

Query: 574 CGSFLILCCCGFFVGDWNTGVNVIGSSLSSSAVDNL--------ALGSVCQRTMLAQLLC 419
           C SF+   CC  F+  ++  ++V  S  S + + ++         + +  ++T+LA  L 
Sbjct: 216 CDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGAPQPVTVIRNQVKQTVLADDLV 275

Query: 418 LGEFSGINNICLK 380
           +G+    +N+ LK
Sbjct: 276 IGDLLYFSNLDLK 288


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 654 INDGLHSDDSILSNSESLNKPNTSTSFY 737
           +   L+SDDS+ + S+S + P+  T  Y
Sbjct: 106 VKQSLYSDDSVFNESKSSSPPDAHTDKY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,396,569
Number of Sequences: 5004
Number of extensions: 78157
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)