Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H08_e544_16.seq
         (1513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368...    33   0.45 
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    29   7.3  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    29   7.3  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    29   9.6  

>08_01_0415 +
           3687998-3688096,3688326-3688520,3689219-3689385,
           3689459-3689509,3689576-3689657,3689764-3689832,
           3689939-3690109
          Length = 277

 Score = 33.5 bits (73), Expect = 0.45
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 DEPLNFTILGGYERGYGIFIFKVEKQSKAEDVGLKRGDQVL 275
           D+PL  T+  G + G G+ I  V+    A   GLK GDQVL
Sbjct: 80  DKPLGLTL--GQKTGGGVVITAVDSGGNAARAGLKSGDQVL 118


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 457 SVCQRTMLAQLLCLGEFSGINNICLKANKLLLTVMLKC 344
           S  + + +  + CLGE S ++N  L  N+  +TV  KC
Sbjct: 278 SGAEASSVCDVCCLGESSTVSNSMLNCNRCKVTVHQKC 315


>02_05_0717 + 31190626-31191234,31191954-31192394,31192699-31192802,
            31193000-31194384,31194508-31194548,31195065-31195133,
            31195335-31195435,31195747-31195825,31195939-31196037,
            31196119-31196187,31197609-31197658,31197749-31197925,
            31198045-31198152,31198224-31198290
          Length = 1132

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 447  WQTDPRARLSTAELLSD-DPITLTPVFQSPTKKPQQ 551
            WQTDP+ R S A++++   P+      Q+P ++ QQ
Sbjct: 1073 WQTDPKLRPSFADIMASLKPLLKNMTAQAPRQRVQQ 1108


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 259 LFNPTSSAFDCFSTLKINIPYPRSYPPRIVKLRGSSL-VGRESVTLLVRAFAEH 101
           L NP +S+F C   +K+ +   R+  P  +   G  L V R+ +  L     EH
Sbjct: 497 LANPVNSSFSCLVKVKVKVQVQRAVRPWSLSSNGDGLGVERKDLERLNEKVKEH 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,529,915
Number of Sequences: 37544
Number of extensions: 540959
Number of successful extensions: 1139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)