Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H08_e544_16.seq
         (1513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   3.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   6.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   6.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   9.1  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 837 LISSVNF*NMFRNNLKTGTHHNILILNQECYVSYKKMYW 721
           +ISS++   +  NN     ++N    N   Y +YKK+Y+
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYY 119


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 659 INSIFRKNIHFHQSFLESSFRSQSH 585
           ++ +FR  +  +  F +SSFR Q H
Sbjct: 327 VSDVFRYGLLIYDFFKDSSFRIQHH 351


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 726 TSFYNSHSIPDLISICY 776
           T+F+ S  + DLI+ CY
Sbjct: 251 TTFFESCGVADLIATCY 267


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 402 PENSPRQRSCANMVRWQTDPRARLSTAELL 491
           P +SPR  S A      T PR   STA  L
Sbjct: 823 PASSPRYLSAAATSSTSTSPRPASSTAATL 852


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 429 CANMVRWQTDPRARLSTAELLSDDPITLTPV 521
           C  ++  Q D ++ LS   LLS D    TP+
Sbjct: 98  CEGVMNIQKDNKSYLSLRSLLSADVAVATPL 128


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 801 NNLKTGTHHNILILNQECYVSYKKMYWY*VYLV 703
           NN K   ++N    N   Y +Y K  +Y  Y++
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 273 LEVNGQSFQHVSHAKAMEIITGSTHLSITVKSNLLAFKQMLLMPENSP 416
           +E+N    Q++ HAK   I   +  LSI  +   +  +Q+  M ++ P
Sbjct: 411 MEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYP 458


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 801 NNLKTGTHHNILILNQECYVSYKKMYW 721
           ++L   T HN    N   Y +YKK+Y+
Sbjct: 83  SSLSNKTIHNNNNYNNNNYNNYKKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,430
Number of Sequences: 438
Number of extensions: 6026
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52874250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)