Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H08_e544_16.seq
         (1513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam...    33   0.49 
At3g57680.1 68416.m06426 peptidase S41 family protein similar to...    31   2.0  
At3g47600.1 68416.m05182 myb family transcription factor (MYB94)...    31   2.6  
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    30   3.5  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    30   3.5  
At4g39390.2 68417.m05576 transporter-related low similarity to g...    29   8.0  
At4g39390.1 68417.m05575 transporter-related low similarity to g...    29   8.0  

>At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam
           profile PF00301: Rubredoxin
          Length = 271

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 111 KARTRSVTLSRPTRDEPLNFTILGGYERGYGIFIFKVEKQSKAEDVGLKRGDQVL 275
           KAR  +        D+PL  T+  G ++G G+ I  V+    A   GLK GDQV+
Sbjct: 77  KARAAASKTIEVEVDKPLGLTL--GQKQGGGVVITGVDGGGNAAKAGLKSGDQVV 129


>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
           PSII D1 protein processing enzyme (GI::7268527)
           [Arabidopsis thaliana]; similar to SP|Q55669
           Carboxyl-terminal processing protease precursor
           (Photosystem II D1 protein processing peptidase) (EC
           3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
           contains Pfam profile PF03572: Peptidase family S41B
          Length = 516

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 231 SKAEDVGLKRGDQVLEVNGQSFQHVSHAKAMEIITGSTHLSITVK 365
           S A+  G+  G++++E+NG+    V    A + + G     +T+K
Sbjct: 219 SPADRAGIHEGEELVEINGEKLDDVDSEAAAQKLRGRVGTFVTIK 263


>At3g47600.1 68416.m05182 myb family transcription factor (MYB94)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB94) GI:3941527
          Length = 333

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 609 LQKALMKMNILPKNTINDGLHSDDSILSNSESLNKPNTSTS 731
           L+K L KMN    +TIN+GL + D  +SN  + +  ++++S
Sbjct: 112 LKKKLKKMNDSCDSTINNGLDNKDFSISNKNTTSHQSSNSS 152


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 231 SKAEDVGLKRGDQVLEVNGQSFQHVSHAKAMEIITGSTHLSITVK 365
           S A+  G+K+GD++L VNG      S  +   ++ G +   + +K
Sbjct: 225 SAADIAGVKQGDEILAVNGMDVSGKSSFEVSSLLQGPSKTFVVLK 269


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 231 SKAEDVGLKRGDQVLEVNGQSFQHVSHAKAMEIITGSTHLSITVK 365
           S A+  G+K+GD++L VNG      S  +   ++ G +   + +K
Sbjct: 225 SAADIAGVKQGDEILAVNGMDVSGKSSFEVSSLLQGPSKTFVVLK 269


>At4g39390.2 68417.m05576 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593
          Length = 337

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 556 LCCCGFFVGDWNTGVNVIGSSLSSSAVDNLALG-SVCQRTMLAQLLCLGEFSGINNICLK 380
           L   G F+  W T   V   + S  ++  L L  S+   T L+Q +C+G F+ ++   L 
Sbjct: 205 LLLVGPFLDYWLTNQRVDAYNFSFVSLFFLILSCSIAVGTNLSQFICIGRFTAVSFQVLG 264

Query: 379 ANKLLLTVML 350
             K +L ++L
Sbjct: 265 HMKTILVLVL 274


>At4g39390.1 68417.m05575 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593
          Length = 337

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 556 LCCCGFFVGDWNTGVNVIGSSLSSSAVDNLALG-SVCQRTMLAQLLCLGEFSGINNICLK 380
           L   G F+  W T   V   + S  ++  L L  S+   T L+Q +C+G F+ ++   L 
Sbjct: 205 LLLVGPFLDYWLTNQRVDAYNFSFVSLFFLILSCSIAVGTNLSQFICIGRFTAVSFQVLG 264

Query: 379 ANKLLLTVML 350
             K +L ++L
Sbjct: 265 HMKTILVLVL 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,708,870
Number of Sequences: 28952
Number of extensions: 427350
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)