Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H07_e536_15.seq
         (1500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   1.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.8  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 382 RRNQHTRHRRLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSY 209
           + N+ T HR + AV +          K+   +S SLRS  R   RTS  +SR + L +
Sbjct: 182 KTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRH 239


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 595 RFHIDYHLVNA*I*NTFTCQKVLYRALHMTKL 500
           + H++YHL N      F C+K  Y  ++ + L
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSML 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 200  SAFNCFKSGLSGRQLTATNKTAKIMRVSAFIFSTIQTASITLVPNXLQPGG 48
            +A+N   +G     L    K +K +   A  F  + T SITL  N    GG
Sbjct: 1438 TAYNGIGTGDPSDMLNTRTKGSKPIIPEAARFIEVATNSITLHLNAWSDGG 1488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,834
Number of Sequences: 438
Number of extensions: 7148
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52395750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)