Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H07_e536_15.seq
         (1500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79640.1 68414.m09286 protein kinase family protein contains ...    31   2.0  

>At1g79640.1 68414.m09286 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 694

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 163 RPDKPDLKQLKAEAA--RKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNN 318
           +P  P  ++   EAA  R+K  LHD T++++  ICA +  +K K+  +   M+N
Sbjct: 641 QPTVPPTEKSMLEAAHEREKELLHDITDLQWRLICAEEELQKYKTEHAQVSMSN 694


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,337
Number of Sequences: 28952
Number of extensions: 443511
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)