Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H06_e528_16.seq
         (1530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    29   2.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   9.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   9.1  

>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 87  TQFVPMSCG*DFQSCISVTKLQQNGGLSCSNFPWSFVGTSECMLRVVF 230
           +Q +P+ CG      +    LQ  G + C  FP+S +G  E  LR V+
Sbjct: 287 SQALPLICGGFLPFVLLTMDLQTAGTILCVFFPYSLIGHKE--LRFVY 332


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 113  VRFSILYQRYQAPTERWPILLELSMELCRHLRMYATRCL 229
            + F+    R QA  ++W    ++S +L R  R+Y   CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 113  VRFSILYQRYQAPTERWPILLELSMELCRHLRMYATRCL 229
            + F+    R QA  ++W    ++S +L R  R+Y   CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,962,414
Number of Sequences: 5004
Number of extensions: 93159
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)