Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H06_e528_16.seq
         (1530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0016 + 110796-110979,111252-111768,111847-112213                 32   1.4  
03_06_0485 + 34242121-34243188                                         31   3.2  
12_01_0648 + 5496696-5497052                                           30   4.2  
07_03_0600 + 19866757-19867218,19867920-19868429                       30   4.2  
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251...    29   7.4  

>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 23/72 (31%), Positives = 28/72 (38%)
 Frame = -3

Query: 1510 PGAVXGGPGXXPTPPXVXXPLGXXXPPGQPXXVSPPXVWGXXXXXRPXXEXVWXXKPPFL 1331
            P A+   P   PTP     P+    PP       PP +W       P    +W   PP L
Sbjct: 161  PPALALAPSPIPTPIIAPPPVSSPAPP------LPP-LWRRRPRRLPP---IWRPTPPSL 210

Query: 1330 KVXTIPPXXXPP 1295
             V T+PP   PP
Sbjct: 211  PVDTMPPPPPPP 222


>03_06_0485 + 34242121-34243188
          Length = 355

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 1399 PXG-GKXKXVGXGAGXXPGGGXRPGGW 1476
            P G G     G GAG  PGGG   GGW
Sbjct: 314  PGGNGDGATGGSGAGVAPGGGGSGGGW 340


>12_01_0648 + 5496696-5497052
          Length = 118

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 1399 PXGGKXKXVGXGAGXXPGGGXRPGG 1473
            P GG+    G GAG  PGGG RP G
Sbjct: 19   PGGGEAVLPGGGAGP-PGGGARPSG 42


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 1494 AGPGXXPPPRXXPXPWXXAXPXANXFXFPPP 1402
            AGP   PPP+  P  W    P    +  PPP
Sbjct: 56   AGPPHAPPPQQPPAMWGQPPPPPPQYAPPPP 86


>08_02_1063 + 24024030-24024506,24024803-24024856,24024965-24025118,
            24025314-24025388,24025511-24025788,24026023-24026253,
            24026522-24026620,24026740-24026889,24027830-24027976,
            24028525-24028575,24028647-24028819,24029018-24029147,
            24029361-24029458,24029655-24029892,24030634-24030837,
            24031003-24031083,24031296-24031535
          Length = 959

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 1426 GXGAGXXPGGGXRPGGWXXPRA 1491
            G G G   GGG   GGW  PRA
Sbjct: 115  GGGGGDGGGGGGGGGGWKRPRA 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,478,979
Number of Sequences: 37544
Number of extensions: 635800
Number of successful extensions: 2292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2079
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4919293792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)