Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H06_e528_16.seq
         (1530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   7.5  

>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 1492 GPGXXPTPPXVXXPLGXXXPPGQPXXVSPPXVWG 1391
            GP   P+PP    P G   PPG    + PP   G
Sbjct: 714  GPASPPSPPGPPGPPGPNGPPGPNGPLGPPGECG 747



 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 1492 GPGXXPTPPXVXXPLGXXXPPGQPXXVSPPXVWG 1391
            GP   P+PP    P G   PPG    + PP   G
Sbjct: 799  GPASPPSPPGPPGPPGPKGPPGPNGPLGPPGECG 832



 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = -3

Query: 1510 PGAVXG-GPGXXPTPPXVXXPLGXXXPPGQPXXVSPP 1403
            PG +   GP   P PP    P     PPG P    PP
Sbjct: 613  PGEIGEIGPAGLPGPPGPASPPSPPGPPGPPGPKGPP 649



 Score = 29.1 bits (62), Expect = 9.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 1492 GPGXXPTPPXVXXPLGXXXPPGQPXXVSPP 1403
            GP   P+PP    P G   PPG    + PP
Sbjct: 629  GPASPPSPPGPPGPPGPKGPPGPNGPLGPP 658



 Score = 29.1 bits (62), Expect = 9.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 1492 GPGXXPTPPXVXXPLGXXXPPGQPXXVSPP 1403
            GP   P+PP    P G   PPG    + PP
Sbjct: 884  GPASPPSPPGPPGPPGPKGPPGPNGCLGPP 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,776,253
Number of Sequences: 59808
Number of extensions: 689653
Number of successful extensions: 1407
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4976817448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)