Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H06_e528_16.seq
         (1530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    34   0.23 
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    31   1.6  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    31   2.9  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    31   2.9  
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    30   3.8  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    30   5.0  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical pr...    29   8.7  
U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical protein
            F08B4.7 protein.
          Length = 142

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 1525 APX*XPGAVXGGPGXXPTPPXVXXPLGXXXPPGQPXXVSPP 1403
            AP   PG   G PG    PP    P+G   PPG P  +  P
Sbjct: 95   APRPFPGPGVGFPGAPGMPPFPGGPMGMAGPPGMPPMMPRP 135


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
            protein Y47D7A.13 protein.
          Length = 311

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 25/90 (27%), Positives = 28/90 (31%)
 Frame = +1

Query: 1216 GAPAXGXXGFXXHXXXYRVFXKSGXRLGXXXXGGLFXLLGXGVXXPXPVXRGAFXLXXXP 1395
            G    G  GF             G   G    GG F     G     P+  GA       
Sbjct: 67   GGGYGGAGGFGGAYQAAPAIGGGGSYAGAGPIGGGFGGAQGGYAGAGPIGGGAQGGYAGA 126

Query: 1396 KPXGGKXKXVGXGAGXXPGGGXRPGGWXXP 1485
             P GG  +  G  AG  P GG   GG+  P
Sbjct: 127  GPIGGGAQ--GGYAGAGPIGGGAQGGYAGP 154


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 601 VIAFSISFVRSLFIQSFCSVIY---GFTIHYFRNICLFYDSFIIFRTVS 738
           +I F  SF+ S   Q F SV +   G  +  F+NI LF ++ I+F+ +S
Sbjct: 221 IIIFIFSFLPSAISQQFQSVNFETVGPIMTMFKNIGLFIEALIVFKVLS 269


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 523 FTCKNFPYLTVQRLKFKIHLL*ILCFVIAFSISFV--RSLFIQSFCSVIYGFTIHYFRNI 696
           FT K+    T     F + +  ++ F+I F I  +  R+   +   + IY  T ++++++
Sbjct: 10  FTIKDLGIYTSMFSLFLLSIFLVILFIIIFPIFVILNRANRRRDEKTAIYPITNYFYKSL 69

Query: 697 CLFYDSFIIFRTVSI 741
           C+FY    IF TV I
Sbjct: 70  CVFY----IFSTVCI 80


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
            protein Y69H2.14 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 17/36 (47%), Positives = 17/36 (47%)
 Frame = -3

Query: 1528 GAPX*XPGAVXGGPGXXPTPPXVXXPLGXXXPPGQP 1421
            GAP   PG V  GPG    PP    P G   P GQP
Sbjct: 249  GAPG-APGQVVAGPGSVG-PPGPQGPPGLAGPDGQP 282


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 601 VIAFSISFVRSLFIQSFCSVIY---GFTIHYFRNICLFYDSFIIFRTVS 738
           +I F  SF+ S   Q F S+ +   G  +  F+NI LF ++ I+F+ +S
Sbjct: 221 IIIFIFSFLPSAISQQFPSINFETVGPIMTMFKNIGLFIEALIVFKVLS 269


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 568 FKIHLL*ILCFVIAFSISFVRSLFIQSFCSVIYGFTIHYF 687
           F +    IL F++   ISFV  LF + FC + Y     +F
Sbjct: 115 FSVRNTKILKFIVWIFISFVAILFYEKFCYIYYDSASRFF 154


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 3 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -3

Query: 1522 PX*XPGAVXGG-PGXXPTPPXVXXPLGXXXPPG---QPXXVSPPXVWG 1391
            P   PG V  G P   P PP    P G   PPG   QP    PP + G
Sbjct: 211  PTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPG 258


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 204 SECMLRVVFYNKLNLNTITKLFHTKRHQD 290
           SE + +++  N ++ NTI K FH KR  D
Sbjct: 145 SESLQKILEENNMHANTIAKKFHDKRSSD 173


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical protein
            T21B4.2 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 1495 GGPGXXPTPPXVXXPLGXXXPPGQPXXVSPP 1403
            GGPG    P  V    G   PPG P    PP
Sbjct: 220  GGPGNPGAPGAVTEVPGQQGPPGPPGPAGPP 250


>Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical
           protein F26D2.1 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
 Frame = +3

Query: 498 FQRFRSKLVYL*KLSISYGTTAKI*NSFIINIVLRHCFLYLIRSIPIHSVVLFCHL---W 668
           F+ +R  +V    L I Y         ++   V  +C LY   S  I +  L   L   W
Sbjct: 37  FETYRIMIVAFASLGIIYSGLEVFIKPYLH--VYNNCILYFSLSTWISAKPLLPWLFAIW 94

Query: 669 XXXXXXXXXXFILRFVYNFPNSFNKINLRFFNYLYII 779
                       ++F+Y F N FN   +R F  + +I
Sbjct: 95  SGMYLVVIAFISIQFIYRFMNFFNPRKMRMFKGVRVI 131


>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 437 RTITFYFIQPYQTKKCICKVWSFWRDLSLTCSNCFL*FIKLVYLTLYHVILVA 279
           R    Y++  Y+TK   C V +F   +SLT + CF+  I     +L ++IL A
Sbjct: 144 RAFATYYVVDYETKHR-CWVAAFCALVSLTYTQCFVIPICFFEASLLYIILFA 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,993,752
Number of Sequences: 27780
Number of extensions: 582211
Number of successful extensions: 1836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4400652752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)