Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H06_e528_16.seq
         (1530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    30   4.6  

>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 ISVTKLQQNGGLSCSNFPWSFVGTSEC 212
           +S  +L +NG L CS   WSF G   C
Sbjct: 137 LSEGRLDENGHLQCSYHGWSFGGCGSC 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,889,019
Number of Sequences: 28952
Number of extensions: 509696
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4096401600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)