Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H05_e520_15.seq
         (1619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    28   3.2  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    28   4.2  

>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 253 DPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVLGAPRS 381
           +PFKS   LVDCG      Y+ L   + L    F  +   P S
Sbjct: 109 NPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYFQLIARKPSS 151


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 169 LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKS 267
           + +++ ++  GT    Y CN+    GC D FK+
Sbjct: 856 MTWVVIMYGFGTGNLSYDCNAHYHAGCNDVFKA 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,791,935
Number of Sequences: 5004
Number of extensions: 67917
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 917746562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)