Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H04_e512_16.seq
         (1468 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q751P0 Cluster: AGL350Cp; n=5; Fungi/Metazoa group|Rep:...    36   2.0  
UniRef50_Q82T41 Cluster: Possible flagellar hook-length control ...    34   8.2  

>UniRef50_Q751P0 Cluster: AGL350Cp; n=5; Fungi/Metazoa group|Rep:
           AGL350Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 335

 Score = 36.3 bits (80), Expect = 2.0
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = +1

Query: 496 KNNKVRENKDKRGKDFKIKIRETTTLSRKRSKKYL*IQNKRL----SVHDTAVEKDKDGY 663
           K +K +E+K+K+ K  K + +E      K+ KK+    NKRL    S+ D    K     
Sbjct: 216 KEHKEKEHKEKKDKKDKKEKKEKKEKKEKKEKKHKEKSNKRLRSSDSIDDPEATKPSKKS 275

Query: 664 SFQLAERARGKRGELFAAEPSVSGPLRRTLPHLSVTTAWPR 786
             + A+     R  +     S + P       LSV + W R
Sbjct: 276 KTKAADSDNVTRDSMLQPRASAASPPPTISTRLSVRSKWIR 316


>UniRef50_Q82T41 Cluster: Possible flagellar hook-length control
           protein; n=1; Nitrosomonas europaea|Rep: Possible
           flagellar hook-length control protein - Nitrosomonas
           europaea
          Length = 381

 Score = 34.3 bits (75), Expect = 8.2
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 677 PSEREANEENFSRLNRLLADLYDVLCHILVSRQ-PGQEAQENRRGE-FPRAPIXPHIT*D 850
           P+ REA E N  RL  ++A+    L    VS   PGQ+A ENR+G  F R     H T D
Sbjct: 301 PAVREAIEANLPRLREIMAENGITLADTSVSADTPGQQA-ENRQGSPFRRPAAGDHSTYD 359

Query: 851 A 853
           +
Sbjct: 360 S 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,857,193
Number of Sequences: 1657284
Number of extensions: 16475767
Number of successful extensions: 39544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39534
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 154859318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)