Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H04_e512_16.seq
         (1468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   2.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   8.6  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 343 TIKLSTAVTNLVLQKVTQSFFVRKKTLLRALSLIHSLFSCNIMRTV 206
           ++ LST +    L KVT +F V    L+    L+HS  S    RT+
Sbjct: 104 SLPLSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTL 149


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 123  QSGLRSLDLFTSFSQRCYSALVEPIVSSTVRIILQLNNE 239
            + G R  ++  SF +    A V+PI  S VR+ L +N++
Sbjct: 1207 KEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQ 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,232,259
Number of Sequences: 5004
Number of extensions: 72748
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)