Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H04_e512_16.seq
         (1468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551...    31   2.3  
08_02_0584 - 19010345-19010656,19010959-19011018                       30   4.0  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    30   5.3  
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411...    30   5.3  

>02_04_0453 +
           23053621-23054167,23054867-23054958,23055085-23055149,
           23058558-23059086
          Length = 410

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 61  GNSARGAERTCSCSNATCIPDRAVCE 138
           GNS RG+ + C CS +TCIP+  V E
Sbjct: 172 GNSFRGSGKYCVCS-STCIPNHVVFE 196


>08_02_0584 - 19010345-19010656,19010959-19011018
          Length = 123

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 496 KNNKVRENKDKRGKDFKIKIRETTTLSRKRSK 591
           K  K ++ K ++GK+ K K+ ETT +++ R+K
Sbjct: 48  KEKKEKKEKKEKGKEKKEKVEETTDVAKLRAK 79


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 649 DKDGYSFQLAERARGKRGELFAAEPSVSGPLRRTLPHLSVTT 774
           D +G+ F   +      G +++++PS SGP   ++P   V T
Sbjct: 2   DPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDT 43


>01_06_0352 +
           28638453-28639391,28639486-28640034,28640388-28641195,
           28641279-28641389,28641556-28641683
          Length = 844

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 649 DKDGYSFQLAERARGKRGELFAAEPSVSGPLRRTLPHLSVTT 774
           D +G+ F   +      G +++++PS SGP   ++P   V T
Sbjct: 2   DPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDT 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,803,309
Number of Sequences: 37544
Number of extensions: 447130
Number of successful extensions: 1033
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4675649524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)