Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_H04_e512_16.seq
(1468 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.76
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 31 1.8
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_40069| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_32391| Best HMM Match : rve (HMM E-Value=4.9e-14) 29 9.4
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 9.4
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 29 9.4
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 9.4
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 32.7 bits (71), Expect = 0.76
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1
Query: 751 KYVVKVR*QTVQPRKVLLVCLSLARQVESYSHLCLFLRRYRVQIAV 614
+YVV+VR V PR V VC+ + R V + S +F+RRY + V
Sbjct: 672 RYVVRVR--VVMPRYVTSVCVVMCRYVHNVS---VFMRRYDTSVRV 712
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 31.5 bits (68), Expect = 1.8
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ T+ A V+++
Sbjct: 1119 TLIIKQVHEKAIHGGVSMTMSLVREKFWVTKLRAQVKRVIHN 1160
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.9 bits (64), Expect = 5.4
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Frame = +1
Query: 472 DFLQNIV*KNNKVRENKDKRGKDFKIKIRETTTL---SRKRSKKYL*IQNKRLSVHDTAV 642
D + NI K E KDKRGK IK+ + +L S KR++ + + + A
Sbjct: 1169 DVIINIGLKVFSEEELKDKRGKKLAIKVNKHASLRNCSNKRNRNGPTFRETCIPKYKQAA 1228
Query: 643 EKDKDGYSFQLA-----ERARGKRGELFAAEPSVSGPLRRT 750
KD + L E R + + ++EP S P++R+
Sbjct: 1229 LKDYKRITLYLCTVNDIEEFRKEERDSDSSEPEASCPVKRS 1269
>SB_40069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 734 PLTDGSAAKSSPRLPLARSAS*KL*PSLSFSTAVSCTDSRLFCIHKYFL 588
PLTD A KS+ R + + S + + +C + FC+++YFL
Sbjct: 74 PLTDERAPKSTRRQESRQDIHTQRTESTTMQSQETCRTNCWFCVYRYFL 122
>SB_32391| Best HMM Match : rve (HMM E-Value=4.9e-14)
Length = 569
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 331 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 372
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 1208 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 1249
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 576 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 617
>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 363 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 404
>SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1019
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 916 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 957
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 365 TYIIKKPHDKTVYGGYKLSLTKSYTKFFRTQKNASTSIVLNS 240
T IIK+ H+K ++GG ++++ KF+ + A V+++
Sbjct: 958 TLIIKQVHEKAIHGGVSMTMSLVREKFWVPKLRAQVKRVIHN 999
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,002,058
Number of Sequences: 59808
Number of extensions: 562673
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4730324131
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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