Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H04_e512_16.seq
         (1468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY909661-1|AAY57109.1|   98|Homo sapiens immunoglobulin heavy ch...    34   1.1  
AY423175-1|AAQ99180.1|  118|Homo sapiens immunoglobulin heavy ch...    33   3.5  
DQ926190-1|ABI50498.1|  116|Homo sapiens immunoglobulin heavy ch...    32   4.6  
AK057400-1|BAB71471.1|  120|Homo sapiens protein ( Homo sapiens ...    32   4.6  
AF460696-1|AAM88067.1|   60|Homo sapiens immunoglobulin heavy ch...    31   8.0  

>AY909661-1|AAY57109.1|   98|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 98

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +1

Query: 511 RENKDKRGKDFKIKIRETTTLSRKRSKKYL*IQNKRLSVHDTAV----EKDKDGYSF 669
           R N D+  K +   ++   T+SR  +K  L +Q   L+V DTAV     +++DGY F
Sbjct: 36  RINSDESVKVYADSVKGRFTISRDNAKNTLYLQMNSLTVEDTAVYFCARENRDGYDF 92


>AY423175-1|AAQ99180.1|  118|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 118

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 511 RENKDKRGKDFKIKIRETTTLSRKRSKKYL*IQNKRLSVHDTAV 642
           R + D    D+   +R+  T+SR  SKK L ++ K L   DTA+
Sbjct: 51  RSDADGGTPDYAASVRDRFTISRDDSKKMLYLEMKNLKTEDTAM 94


>DQ926190-1|ABI50498.1|  116|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 116

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 505 KVRENKDKRGKDFKIKIRETTTLSRKRSKKYL*IQNKRLSVHDTAV 642
           +++  KD   KD+   ++   T+SR  SK  L +Q   L   DTAV
Sbjct: 49  RIKSKKDGETKDYAAPVKGRFTISRDDSKNTLYLQMNSLKSEDTAV 94


>AK057400-1|BAB71471.1|  120|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32838 fis, clone TESTI2003299. ).
          Length = 120

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 825 GARGNSPRRFSWASWPGCRDTKMWQSTS*RSANRRFSR 712
           GA G SPRR   + WP     + W  TS +  +RR SR
Sbjct: 66  GASGPSPRRSRCSQWPRTACPQAWPGTSWQWGSRRRSR 103


>AF460696-1|AAM88067.1|   60|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 60

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 505 KVRENKDKRGKDFKIKIRETTTLSRKRSKKYL*IQNKRLSVHDTAVEKDKDGYSF 669
           +++   D    D+   ++   T+SR  SK  L +Q   L   DTAV     GY F
Sbjct: 1   RIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTGYDF 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,983,509
Number of Sequences: 237096
Number of extensions: 2562048
Number of successful extensions: 5504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5504
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21649607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)