Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H04_e512_16.seq
         (1468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313178-1|AAP79303.1|  569|Caenorhabditis elegans myotubularin-...    29   6.3  
AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm (myotubul...    29   6.3  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   8.3  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   8.3  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   8.3  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   8.3  

>AY313178-1|AAP79303.1|  569|Caenorhabditis elegans
           myotubularin-related protein MTM-9 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 703 LLVCLSLARQVESYSHLCLFLRRYRVQIAVCFVFINTFWTFFDL 572
           L +C + AR +ES S++  FL  Y       F  ++  W+ FDL
Sbjct: 97  LEICRATARTIESLSNINGFLHDYAFFYNSPFTILDDGWSAFDL 140


>AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm
           (myotubularin) family protein9, isoform a protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 703 LLVCLSLARQVESYSHLCLFLRRYRVQIAVCFVFINTFWTFFDL 572
           L +C + AR +ES S++  FL  Y       F  ++  W+ FDL
Sbjct: 97  LEICRATARTIESLSNINGFLHDYAFFYNSPFTILDDGWSAFDL 140


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40   SGIPRAAGNSARGAERTCSCS--NATCIPDRAVCEVSICLHRSVSD 171
            SG  R    S  GA   C C+  +ATC PD  +C  + C H +  D
Sbjct: 1813 SGYHRVQSGSFLGACVPCECNGHSATCDPDTGIC--TDCEHNTNGD 1856


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40   SGIPRAAGNSARGAERTCSCS--NATCIPDRAVCEVSICLHRSVSD 171
            SG  R    S  GA   C C+  +ATC PD  +C  + C H +  D
Sbjct: 1813 SGYHRVQSGSFLGACVPCECNGHSATCDPDTGIC--TDCEHNTNGD 1856


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40   SGIPRAAGNSARGAERTCSCS--NATCIPDRAVCEVSICLHRSVSD 171
            SG  R    S  GA   C C+  +ATC PD  +C  + C H +  D
Sbjct: 1813 SGYHRVQSGSFLGACVPCECNGHSATCDPDTGIC--TDCEHNTNGD 1856


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40   SGIPRAAGNSARGAERTCSCS--NATCIPDRAVCEVSICLHRSVSD 171
            SG  R    S  GA   C C+  +ATC PD  +C  + C H +  D
Sbjct: 1813 SGYHRVQSGSFLGACVPCECNGHSATCDPDTGIC--TDCEHNTNGD 1856


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,629,179
Number of Sequences: 27780
Number of extensions: 421770
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4204297912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)