Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H03_e504_15.seq
         (1523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    96   1e-20
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    28   3.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   6.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   6.8  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   9.0  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
 Frame = +3

Query: 342 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 521
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 522 QA-----TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVM 686
           QA     +   A   K                                         +VM
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELVM 143

Query: 687 SQANVSRARAVRALRNNQSDIVNAIMELTM 776
           +QANVSRA+AV AL+ N SD+VNAIM LTM
Sbjct: 144 AQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +3

Query: 150 ELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQ 329
           E   ++   + +  K  EE          T+P       P AGG     AG +  S A++
Sbjct: 35  EAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGG----AAGAEATSAAEE 90

Query: 330 SRGEKKARKIMSKLGLKL 383
           ++ E+ A +    +G  L
Sbjct: 91  AKEEEAAEESDEDMGFGL 108


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 231 LNHCLRKQSLPYVSPSLMQWLYRVLLVQACLDFL*QSDNSF 109
           +   LR+ S  Y+  + + W+Y+  L+ AC      SD+++
Sbjct: 414 IQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDTY 454


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 503 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 357
           LR+S YY S  ++     ++ D   YVL FP+ N+    Y+ E K  +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +3

Query: 135 NPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIV 314
           +P  P   EL+ +T+    K  E ++         + + E  G+     +S+ IA +D  
Sbjct: 231 SPQSPVKRELNDSTSP--SKLSESSSSLTGSSSALLSQSEFLGS--VPSLSDSIATVDPF 286

Query: 315 SKAKQSRGEKKARKIMSKLGLKLVQ 389
              +    ++KAR ++    LKL Q
Sbjct: 287 FSFESFETDEKARSLLMDASLKLPQ 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,352,915
Number of Sequences: 5004
Number of extensions: 77584
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)