Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H03_e504_15.seq
         (1523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          133   4e-31
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   128   2e-29
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    30   5.5  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    29   9.7  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  133 bits (321), Expect = 4e-31
 Identities = 71/151 (47%), Positives = 96/151 (63%)
 Frame = +3

Query: 321 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 500
           +KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 501 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXI 680
           KIEDLS Q    AA++F+                     A                   +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKVMSKPDAAAA-----APADEEEEVDETGIEPRDIDL 189

Query: 681 VMSQANVSRARAVRALRNNQSDIVNAIMELT 773
           VM+QA+VSRA+AV+AL+ +  DIV+AIMELT
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIVSAIMELT 220


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  128 bits (308), Expect = 2e-29
 Identities = 81/178 (45%), Positives = 99/178 (55%), Gaps = 19/178 (10%)
 Frame = +3

Query: 297 AGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKN----------------- 425
           AG D   ++KQSR EKK+RK M KLG+K + GV+RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 426 --ILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXX 599
             ILFVI+ PDVFK+P+SDTY++FGEAKIEDLS Q    AAE+FK               
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFK-------APDLSNVI 162

Query: 600 XXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELT 773
               P A                   +VM+QA VSR+RAV+AL+    DIV AIMELT
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMELT 220


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 478 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 365
           V + G L  SG  +TK++FF+FL   +    T+L  SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273


>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 189 EKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMS 365
           E  KEE          +I  +E+ G  GA    + + G    S    SRG   AR+IMS
Sbjct: 589 ESEKEEEERMSVIPSGSIRMMEEDGGAGAPSSEDTVGGSGSGSGRGSSRGGGGAREIMS 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,892,645
Number of Sequences: 37544
Number of extensions: 572526
Number of successful extensions: 1259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)