Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H03_e504_15.seq
         (1523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    43   6e-04
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)                   30   4.2  

>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 43.2 bits (97), Expect = 6e-04
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = +3

Query: 678 IVMSQANVSRARAVRALRNNQSDIVNAIM 764
           +VM QANVSR +A+ AL+ N++DIVNAIM
Sbjct: 13  LVMQQANVSRNKAIMALKKNENDIVNAIM 41


>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 283 FLTPSQALISCPKQSSLVARRRRAK 357
           F TP+++L+SC + S +++R+RR K
Sbjct: 55  FATPNRSLMSCTESSPILSRQRRTK 79


>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
          Length = 515

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 362 EQTWPQACTRCKQSYNKEIKEHTLCDQQS*CLQEPTLGHLHSIWRGEDRGSVTASHY 532
           E T P +   CK SY KE  EH +   +   ++ P  G  H++   +   +V   H+
Sbjct: 451 EMTKPMSSKNCKHSYEKEAIEHMIKKSRVKSVRCPISGCPHTLTLNDLEVNVELEHH 507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,891,433
Number of Sequences: 59808
Number of extensions: 637790
Number of successful extensions: 1493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4953341894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)