Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H03_e504_15.seq
         (1523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   143   3e-34
AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   142   8e-34
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.70 
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    30   5.0  

>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  143 bits (346), Expect = 3e-34
 Identities = 82/159 (51%), Positives = 96/159 (60%)
 Frame = +3

Query: 300 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 479
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 480 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXX 659
           YI+FGEAKIEDL+Q A M+A E  K                                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVEEDENEDVEF-------KEDSTGI 158

Query: 660 XXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELTM 776
                 +V+SQAN +R +A+RAL+   +DIVNAIM LTM
Sbjct: 159 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  142 bits (343), Expect = 8e-34
 Identities = 82/159 (51%), Positives = 96/159 (60%)
 Frame = +3

Query: 300 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 479
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 480 YIVFGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXX 659
           YI+FGEAKIEDL+Q A M+A E  K                                   
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREAPQLKTVE---------EDENEDVEEDSTGI 156

Query: 660 XXXXXXIVMSQANVSRARAVRALRNNQSDIVNAIMELTM 776
                 +V+SQAN +R +A+RAL+   +DIVNAIM LTM
Sbjct: 157 EEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +3

Query: 276 GGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDV 455
           GG   P     ++ K   +  +KK +  + KL +  + G+  V + K    +   NNP V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 456 FKNPHSDTYIVFGEAKIEDLSQ 521
             +  ++T+ V G A  + +++
Sbjct: 82  QTSVPANTFSVTGSADNKQITE 103


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 294 IAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINN 446
           I G+D  S+A+  R  KK   ++ +LG  +    N+V    + N+L +  N
Sbjct: 205 ILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNMLPIFAN 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,927,098
Number of Sequences: 27780
Number of extensions: 469510
Number of successful extensions: 1239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4379894956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)