Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H03_e504_15.seq
         (1523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49470.1 68416.m05407 nascent polypeptide-associated complex ...   136   3e-32
At3g12390.1 68416.m01544 nascent polypeptide associated complex ...   136   3e-32
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ...   136   4e-32
At4g10480.1 68417.m01720 nascent polypeptide associated complex ...   132   6e-31
At5g13850.1 68418.m01619 nascent polypeptide-associated complex ...   117   2e-26
At4g33530.1 68417.m04765 potassium transporter family protein si...    31   2.0  

>At3g49470.1 68416.m05407 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 217

 Score =  136 bits (330), Expect = 3e-32
 Identities = 70/155 (45%), Positives = 96/155 (61%)
 Frame = +3

Query: 309 IVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIV 488
           +   +KQSR EKK+RK M KLG+K V GV+RVTI+++KN+LF I+ PDVFK+PHS+TY++
Sbjct: 63  VSGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVI 122

Query: 489 FGEAKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXX 668
           FGEAKIEDLS Q    AA++F+                                      
Sbjct: 123 FGEAKIEDLSSQLQTQAAQQFR-MPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEAR 181

Query: 669 XXXIVMSQANVSRARAVRALRNNQSDIVNAIMELT 773
              +VM+QA VSR++AV+AL+++  DIV+AIMELT
Sbjct: 182 DIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216


>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score =  136 bits (330), Expect = 3e-32
 Identities = 76/152 (50%), Positives = 93/152 (61%)
 Frame = +3

Query: 318 KAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGE 497
           K+KQSR EKK+RK M KLG+K + GV+RVT++KSKNILFVI+ PDVFK+P SDTY++FGE
Sbjct: 56  KSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGE 115

Query: 498 AKIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXX 677
           AKIEDLS Q    AAE+FK                     A                   
Sbjct: 116 AKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSA-----AVVQDDEEVDEEGVEPKDIE 170

Query: 678 IVMSQANVSRARAVRALRNNQSDIVNAIMELT 773
           +VM+QA VSR  AV+AL+    DIV+AIMELT
Sbjct: 171 LVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202


>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 209

 Score =  136 bits (329), Expect = 4e-32
 Identities = 70/151 (46%), Positives = 96/151 (63%)
 Frame = +3

Query: 321 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 500
           AKQSR EKK+RK + KLG+K V  V+RVTI+++KN+LFVI+ PDV+K+P+++TY++FGEA
Sbjct: 59  AKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEA 118

Query: 501 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXI 680
           K++DLS Q    AA+RFK                   P+A                   +
Sbjct: 119 KVDDLSSQLQTQAAQRFK-MPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDL 177

Query: 681 VMSQANVSRARAVRALRNNQSDIVNAIMELT 773
           VM+QA VS+A+AV AL+ N  DIV+AIMELT
Sbjct: 178 VMTQAGVSKAKAVSALKANDGDIVSAIMELT 208


>At4g10480.1 68417.m01720 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 212

 Score =  132 bits (319), Expect = 6e-31
 Identities = 70/151 (46%), Positives = 93/151 (61%)
 Frame = +3

Query: 321 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 500
           +KQSR EKK+RK M KLG+K V  V+RVTI++SKN+LFVI+ PDVFK+P+S+TY++FGEA
Sbjct: 62  SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEA 121

Query: 501 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXI 680
           KI+D+S Q    AA+RFK                                         +
Sbjct: 122 KIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATV-AQEEEDDEDVDETGVEAKDIDL 180

Query: 681 VMSQANVSRARAVRALRNNQSDIVNAIMELT 773
           VM+QA VSR +AV+AL+ +  DIV+AIMELT
Sbjct: 181 VMTQAGVSRPKAVKALKESNGDIVSAIMELT 211


>At5g13850.1 68418.m01619 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 159

 Score =  117 bits (281), Expect = 2e-26
 Identities = 54/79 (68%), Positives = 67/79 (84%)
 Frame = +3

Query: 318 KAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGE 497
           ++KQSR EKK+RK M KLG+K + GV+RVT++KSKNILFVI+ PDVFK+P SDTY++FGE
Sbjct: 52  RSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGE 111

Query: 498 AKIEDLSQQATMAAAERFK 554
           AKIEDLS Q    AAE+FK
Sbjct: 112 AKIEDLSSQLQSQAAEQFK 130


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 550 NLSAAAIVACCDRSSIFASPNTM*VSECGFLKTSGLLITKSMFF----DFLIVTLF 395
           +L    ++  C  S+IFA  N   ++E G + T+ +L+T  M      + ++V++F
Sbjct: 480 SLLVVCLIVVCSTSNIFAIGNAYGIAELGIMMTTTILVTLIMLLIWQTNIIVVSMF 535


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,653,048
Number of Sequences: 28952
Number of extensions: 433727
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)